Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: haplotype-hla-a-1-r4 - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "haplotype-hla-a-1-r4",
  "meta" : {
    "profile" : [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"haplotype-hla-a-1-r4\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-haplotype.html\">Haplotype</a></p></div><p><b>basedOn</b>: <span>: Sequence-based typing of HLA-A for sample 001-246802468</span></p><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: Haplotype name <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#84414-2; <a href=\"https://loinc.org/\">LOINC</a>#57290-9 \"HLA-A [Type] by High resolution\")</span></p><p><b>effective</b>: 2018-07-26</p><p><b>performer</b>: <span>: aTypingLab, Inc</span></p><p><b>value</b>: HLA-A*03:01:01:01 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (hla[3.31.0]#HLA-A*03:01:01:01)</span></p><p><b>specimen</b>: <span>: buccal swab: 123456789</span></p><p><b>derivedFrom</b>: <span>: Sequence for HLA-A*03:01:01:01</span></p><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied [ID] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#48018-6)</span></td><td>HLA-A <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (geneId#HGNC:4931)</span></td></tr></table></div>"
  },
  "basedOn" : [
    {
      "type" : "ServiceRequest",
      "display" : "Sequence-based typing of HLA-A for sample 001-246802468"
    }
  ],
  "status" : "final",
  "category" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
          "code" : "laboratory"
        }
      ]
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "http://loinc.org",
        "code" : "84414-2",
        "display" : "Haplotype name"
      },
      {
        "system" : "http://loinc.org",
        "code" : "57290-9",
        "display" : "HLA-A [Type] by High resolution"
      }
    ]
  },
  "effectiveDateTime" : "2018-07-26",
  "performer" : [
    {
      "type" : "Organization",
      "display" : "aTypingLab, Inc"
    }
  ],
  "valueCodeableConcept" : {
    "coding" : [
      {
        "system" : "http://www.ebi.ac.uk/ipd/imgt/hla",
        "version" : "3.31.0",
        "code" : "HLA-A*03:01:01:01"
      }
    ]
  },
  "specimen" : {
    "display" : "buccal swab: 123456789"
  },
  "derivedFrom" : [
    {
      "type" : "MolecularSequence",
      "display" : "Sequence for HLA-A*03:01:01:01"
    }
  ],
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "48018-6",
            "display" : "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://www.genenames.org/geneId",
            "code" : "HGNC:4931",
            "display" : "HLA-A"
          }
        ],
        "text" : "HLA-A"
      }
    }
  ]
}