Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: genotype-hla-a-glstring-r4 - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "genotype-hla-a-glstring-r4"];
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype";
       fhir:index 0;
       fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"genotype-hla-a-glstring-r4\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genotype.html\">Genotype</a></p></div><p><b>basedOn</b>: <span>: Sequence-based typing of HLA-A for sample-id=123456789</span></p><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: Genotype display name <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#84413-4; <a href=\"https://loinc.org/\">LOINC</a>#57290-9 \"HLA-A [Type] by High resolution\")</span></p><p><b>effective</b>: 2018-07-26</p><p><b>performer</b>: <span>: aTypingLab, Inc</span></p><p><b>value</b>: hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (glstring.org[1.0]#hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01)</span></p><p><b>method</b>: PACBIO Sequel <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><p><b>specimen</b>: <span>: buccal swab: 123456789</span></p><p><b>derivedFrom</b>: </p><ul><li><span>: HLA-A Allele: HLA-A*03:01:01:01</span></li><li><span>: HLA-A Allele: HLA-A*30:01:01</span></li></ul><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied [ID] <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#48018-6)</span></td><td>HLA-A <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (geneId#HGNC:4931)</span></td></tr></table></div>"
  ];
  fhir:Observation.basedOn [
     fhir:index 0;
     fhir:Reference.display [ fhir:value "Sequence-based typing of HLA-A for sample-id=123456789" ]
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
       fhir:Coding.code [ fhir:value "laboratory" ]     ]
  ];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:84413-4;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "84413-4" ];
       fhir:Coding.display [ fhir:value "Genotype display name" ]     ], [
       fhir:index 1;
       a loinc:57290-9;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "57290-9" ];
       fhir:Coding.display [ fhir:value "HLA-A [Type] by High resolution" ]     ]
  ];
  fhir:Observation.effectiveDateTime [ fhir:value "2018-07-26"^^xsd:date];
  fhir:Observation.performer [
     fhir:index 0;
     fhir:Reference.type [ fhir:value "Organization" ];
     fhir:Reference.display [ fhir:value "aTypingLab, Inc" ]
  ];
  fhir:Observation.valueCodeableConcept [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://glstring.org" ];
       fhir:Coding.version [ fhir:value "1.0" ];
       fhir:Coding.code [ fhir:value "hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01" ]     ]
  ];
  fhir:Observation.method [
     fhir:CodeableConcept.text [ fhir:value "PACBIO Sequel" ]
  ];
  fhir:Observation.specimen [
     fhir:Reference.display [ fhir:value "buccal swab: 123456789" ]
  ];
  fhir:Observation.derivedFrom [
     fhir:index 0;
     fhir:Reference.type [ fhir:value "Observation" ];
     fhir:Reference.display [ fhir:value "HLA-A Allele: HLA-A*03:01:01:01" ]
  ], [
     fhir:index 1;
     fhir:Reference.type [ fhir:value "Observation" ];
     fhir:Reference.display [ fhir:value "HLA-A Allele: HLA-A*30:01:01" ]
  ];
  fhir:Observation.component [
     fhir:index 0;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a loinc:48018-6;
         fhir:Coding.system [ fhir:value "http://loinc.org" ];
         fhir:Coding.code [ fhir:value "48018-6" ];
         fhir:Coding.display [ fhir:value "Gene studied [ID]" ]       ]     ];
     fhir:Observation.component.valueCodeableConcept [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://www.genenames.org/geneId" ];
         fhir:Coding.code [ fhir:value "HGNC:4931" ];
         fhir:Coding.display [ fhir:value "HLA-A" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.