Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: PGxGenomicsReportEMERGE-withGrouping - XML Representation

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<DiagnosticReport xmlns="http://hl7.org/fhir">
  <id value="PGxGenomicsReportEMERGE-withGrouping"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><h2><span title="Codes: {https://hgsc.bcm.edu/lab-test-codes/ emerge-seq-ngs-pnl}">emerge-seq-ngs-pnl</span> (<span title="Codes: {http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span>) </h2><table class="grid"><tr><td>Subject</td><td><b>Adam B. Everyman </b> male, DoB: 1951-01-20 ( Medical Record Number: m123 (USUAL))</td></tr><tr><td>When For</td><td>2020-01-01 12:00:00-0500</td></tr><tr><td>Reported</td><td>2020-01-01 12:00:00-0500</td></tr></table><p><b>Report Details</b></p><table class="grid"><tr><td><b>Code</b></td><td><b>Value</b></td></tr><tr><td><a href="Observation-OverallInterpExample2.html"><span title="Codes: {http://loinc.org 51968-6}">Discrete variation analysis overall interpretation</span></a></td><td><span title="Codes: {http://loinc.org LA6576-8}">Positive</span></td></tr><tr><td><a href="Observation-GrouperEx01.html"><span title="Codes: {http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td></td></tr><tr><td><a href="Observation-GrouperEx02.html"><span title="Codes: {http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td></td></tr><tr><td><a href="Observation-GrouperEx03.html"><span title="Codes: {http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td></td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
    <valueReference>
      <reference value="Task/PGxRecEx01"/>
      <display value="No clopidogrel"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
    <valueReference>
      <reference value="Task/PGxRecEx02"/>
      <display value="No voriconazole"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
    <valueReference>
      <reference value="Task/PGxRecEx03"/>
      <display value="50% citalopram"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
    <valueReference>
      <reference value="Task/PGxRecEx04"/>
      <display value="50% escitalopram"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
    <valueReference>
      <reference value="Task/PGxRecEx04"/>
      <display value="50% amitriptyline"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-file">
    <valueReference>
      <reference value="DocumentReference/VCFFile"/>
    </valueReference>
  </extension>
  <basedOn>
    <reference value="ServiceRequest/eMERGEServiceRequest"/>
  </basedOn>
  <status value="final"/>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
      <code value="GE"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="https://hgsc.bcm.edu/lab-test-codes/"/>
      <code value="emerge-seq-ngs-pnl"/>
    </coding>
  </code>
  <subject>
    <reference value="Patient/CGPatientExample01"/>
  </subject>
  <effectiveDateTime value="2020-01-01T00:00:00-05:00"/>
  <issued value="2020-01-01T00:00:00-05:00"/>
  <performer>
    <reference value="Organization/ExampleOrg"/>
  </performer>
  <result>
    <reference value="Observation/OverallInterpExample2"/>
    <display value="gene-drug interactions found."/>
  </result>
  <result>
    <reference value="Observation/GrouperEx01"/>
    <display value="Therapeutic Implications"/>
  </result>
  <result>
    <reference value="Observation/GrouperEx02"/>
    <display value="Genotypes"/>
  </result>
  <result>
    <reference value="Observation/GrouperEx03"/>
    <display value="Regions studied and Variants"/>
  </result>
</DiagnosticReport>