Genomics Reporting Implementation Guide
3.0.0 - STU3
Genomics Reporting Implementation Guide
3.0.0 - STU3
This page is part of the Genetic Reporting Implementation Guide (v3.0.0: STU3) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Active as of 2024-12-12 |
{
"resourceType" : "OperationDefinition",
"id" : "find-study-metadata",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: OperationDefinition find-study-metadata</b></p><a name=\"find-study-metadata\"> </a><a name=\"hcfind-study-metadata\"> </a><a name=\"find-study-metadata-en-US\"> </a><h3>Parameters</h3><table class=\"grid\"><tr><td><b>Use</b></td><td><b>Name</b></td><td><b>Scope</b></td><td><b>Cardinality</b></td><td><b>Type</b></td><td><b>Binding</b></td><td><b>Documentation</b></td></tr><tr><td>IN</td><td>subject</td><td/><td>1..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a><br/>(<a href=\"http://hl7.org/fhir/R4/search.html#reference\">reference</a>)</td><td/><td><div><p>The subject of interest.</p>\n</div></td></tr><tr><td>IN</td><td>testIdentifiers</td><td/><td>0..*</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a><br/>(<a href=\"http://hl7.org/fhir/R4/search.html#token\">token</a>)</td><td/><td><div><p>List of test identifiers. Metadata for each test is returned.</p>\n</div></td></tr><tr><td>IN</td><td>testDateRange</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#Period\">Period</a></td><td/><td><div><p>Metadata for each test performed during the range is returned.</p>\n</div></td></tr><tr><td>IN</td><td>specimenIdentifiers</td><td/><td>0..*</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a><br/>(<a href=\"http://hl7.org/fhir/R4/search.html#token\">token</a>)</td><td/><td><div><p>List of specimen identifiers. Metadata for each test based on a supplied specimen identifier is returned.</p>\n</div></td></tr><tr><td>IN</td><td>ranges</td><td/><td>0..*</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a><br/>(<a href=\"http://hl7.org/fhir/R4/search.html#special\">special</a>)</td><td/><td><div><p>List of regions for which additional study information is sought. If ranges are supplied, then each returned test will include studied and uncallable regions. Must be in zero-based RefSeq:Integer-range format (e.g. 'NC_000007.14:55174721-55174820').</p>\n</div></td></tr><tr><td>OUT</td><td>tests</td><td/><td>0..*</td><td></td><td/><td/></tr><tr><td>OUT</td><td>tests.testId</td><td/><td>1..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a></td><td/><td><div><p>test identifier</p>\n</div></td></tr><tr><td>OUT</td><td>tests.testDate</td><td/><td>1..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#dateTime\">dateTime</a></td><td/><td><div><p>test date</p>\n</div></td></tr><tr><td>OUT</td><td>tests.specimenId</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a></td><td/><td><div><p>specimen identifier</p>\n</div></td></tr><tr><td>OUT</td><td>tests.genomicBuild</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#CodeableConcept\">CodeableConcept</a></td><td/><td><div><p>preferred codes: https://loinc.org/LL1040-6/</p>\n</div></td></tr><tr><td>OUT</td><td>tests.dnaChangeType</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#CodeableConcept\">CodeableConcept</a></td><td/><td><div><p>preferred codes: http://www.sequenceontology.org/browser/current_release/term/SO:0002072</p>\n</div></td></tr><tr><td>OUT</td><td>tests.regionStudied</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a></td><td/><td><div><p>List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'</p>\n</div></td></tr><tr><td>OUT</td><td>tests.uncallableRegions</td><td/><td>0..1</td><td><a href=\"http://hl7.org/fhir/R4/datatypes.html#string\">string</a></td><td/><td><div><p>List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'</p>\n</div></td></tr></table></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
}
],
"url" : "http://hl7.org/fhir/uv/genomics-reporting/OperationDefinition/find-study-metadata",
"version" : "3.0.0",
"name" : "FindStudyMetadata",
"title" : "Find Study Metadata",
"status" : "active",
"kind" : "operation",
"date" : "2024-12-12T21:16:09+00:00",
"publisher" : "HL7 International / Clinical Genomics",
"contact" : [
{
"name" : "HL7 International / Clinical Genomics",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system" : "email",
"value" : "cg@lists.HL7.org"
}
]
}
],
"description" : "Retrieve metadata about sequencing studies performed on a subject.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"code" : "match",
"system" : false,
"type" : true,
"instance" : false,
"parameter" : [
{
"name" : "subject",
"use" : "in",
"min" : 1,
"max" : "1",
"documentation" : "The subject of interest.",
"type" : "string",
"searchType" : "reference"
},
{
"name" : "testIdentifiers",
"use" : "in",
"min" : 0,
"max" : "*",
"documentation" : "List of test identifiers. Metadata for each test is returned.",
"type" : "string",
"searchType" : "token"
},
{
"name" : "testDateRange",
"use" : "in",
"min" : 0,
"max" : "1",
"documentation" : "Metadata for each test performed during the range is returned.",
"type" : "Period"
},
{
"name" : "specimenIdentifiers",
"use" : "in",
"min" : 0,
"max" : "*",
"documentation" : "List of specimen identifiers. Metadata for each test based on a supplied specimen identifier is returned.",
"type" : "string",
"searchType" : "token"
},
{
"name" : "ranges",
"use" : "in",
"min" : 0,
"max" : "*",
"documentation" : "List of regions for which additional study information is sought. If ranges are supplied, then each returned test will include studied and uncallable regions. Must be in zero-based RefSeq:Integer-range format (e.g. 'NC_000007.14:55174721-55174820').",
"type" : "string",
"searchType" : "special"
},
{
"name" : "tests",
"use" : "out",
"min" : 0,
"max" : "*",
"part" : [
{
"name" : "testId",
"use" : "out",
"min" : 1,
"max" : "1",
"documentation" : "test identifier",
"type" : "string"
},
{
"name" : "testDate",
"use" : "out",
"min" : 1,
"max" : "1",
"documentation" : "test date",
"type" : "dateTime"
},
{
"name" : "specimenId",
"use" : "out",
"min" : 0,
"max" : "1",
"documentation" : "specimen identifier",
"type" : "string"
},
{
"name" : "genomicBuild",
"use" : "out",
"min" : 0,
"max" : "1",
"documentation" : "preferred codes: https://loinc.org/LL1040-6/",
"type" : "CodeableConcept"
},
{
"name" : "dnaChangeType",
"use" : "out",
"min" : 0,
"max" : "1",
"documentation" : "preferred codes: http://www.sequenceontology.org/browser/current_release/term/SO:0002072",
"type" : "CodeableConcept"
},
{
"name" : "regionStudied",
"use" : "out",
"min" : 0,
"max" : "1",
"documentation" : "List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'",
"type" : "string"
},
{
"name" : "uncallableRegions",
"use" : "out",
"min" : 0,
"max" : "1",
"documentation" : "List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'",
"type" : "string"
}
]
}
]
}
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-12-12
Links: Table of Contents |
QA Report
| Version History |
|
Propose a change