Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: GenRiskDiabetesT2 - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:RiskAssessment ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "GenRiskDiabetesT2"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: RiskAssessment</b><a name=\"GenRiskDiabetesT2\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource RiskAssessment &quot;GenRiskDiabetesT2&quot; </p></div><p><b>parent</b>: <a href=\"Observation-PolyGenicDiagnosticImpExample.html\">Observation/PolyGenicDiagnosticImpExample</a></p><p><b>status</b>: final</p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Patient/CGPatientExample01</a> &quot; EVERYMAN&quot;</p><p><b>basis</b>: </p><ul><li><span>: Variant 1</span></li><li><span>: Variant 2</span></li><li><span>: Variant 3</span></li><li><span>: Variant 4</span></li><li><span>: Variant 5</span></li><li><span>: Variant 6</span></li><li><span>: Variant 7</span></li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: Low likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-risk-probability.html\">Risk Probability</a>#low)</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: High likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-risk-probability.html\">Risk Probability</a>#high)</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>"
  ] ; # 
  fhir:parent [
fhir:reference [ fhir:v "Observation/PolyGenicDiagnosticImpExample" ]
  ] ; # 
  fhir:status [ fhir:v "final"] ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/CGPatientExample01" ]
  ] ; # 
  fhir:basis ( [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "11" ]     ] ;
fhir:display [ fhir:v "Variant 1" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "12" ]     ] ;
fhir:display [ fhir:v "Variant 2" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "13" ]     ] ;
fhir:display [ fhir:v "Variant 3" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "14" ]     ] ;
fhir:display [ fhir:v "Variant 4" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "15" ]     ] ;
fhir:display [ fhir:v "Variant 5" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "16" ]     ] ;
fhir:display [ fhir:v "Variant 6" ]
  ] [
fhir:identifier [
fhir:system [ fhir:v "http://hospital.example.org"^^xsd:anyURI ] ;
fhir:value [ fhir:v "17" ]     ] ;
fhir:display [ fhir:v "Variant 7" ]
  ] ) ; # 
  fhir:prediction ( [
fhir:outcome [
      ( fhir:coding [
a sct:44054006 ;
fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
fhir:code [ fhir:v "44054006" ] ;
fhir:display [ fhir:v "Diabetes mellitus type 2 (disorder)" ]       ] )     ] ;
fhir:probability [ fhir:v "0.26"^^xsd:decimal ] ;
fhir:qualitativeRisk [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/risk-probability"^^xsd:anyURI ] ;
fhir:code [ fhir:v "low" ] ;
fhir:display [ fhir:v "Low likelihood" ]       ] )     ] ;
fhir:relativeRisk [ fhir:v "1.05"^^xsd:decimal ] ;
fhir:when [
a fhir:Range ;
fhir:high [
fhir:value [ fhir:v "53"^^xsd:decimal ] ;
fhir:unit [ fhir:v "years" ] ;
fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "a" ]       ]     ]
  ] [
fhir:outcome [
      ( fhir:coding [
a sct:44054006 ;
fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
fhir:code [ fhir:v "44054006" ] ;
fhir:display [ fhir:v "Diabetes mellitus type 2 (disorder)" ]       ] )     ] ;
fhir:probability [ fhir:v "0.7"^^xsd:decimal ] ;
fhir:qualitativeRisk [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/risk-probability"^^xsd:anyURI ] ;
fhir:code [ fhir:v "high" ] ;
fhir:display [ fhir:v "High likelihood" ]       ] )     ] ;
fhir:relativeRisk [ fhir:v "2.69"^^xsd:decimal ] ;
fhir:when [
a fhir:Range ;
fhir:high [
fhir:value [ fhir:v "65"^^xsd:decimal ] ;
fhir:unit [ fhir:v "years" ] ;
fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "a" ]       ]     ]
  ] ) . #