Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: Find Study Metadata - XML Representation

Active as of 2023-12-18

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<OperationDefinition xmlns="http://hl7.org/fhir">
  <id value="find-study-metadata"/>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p>Parameters</p><table class="grid"><tr><td><b>Use</b></td><td><b>Name</b></td><td><b>Scope</b></td><td><b>Cardinality</b></td><td><b>Type</b></td><td><b>Binding</b></td><td><b>Documentation</b></td></tr><tr><td>IN</td><td>subject</td><td/><td>1..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a><br/>(<a href="http://hl7.org/fhir/R4/search.html#reference">reference</a>)</td><td/><td><div><p>The subject of interest.</p>
</div></td></tr><tr><td>IN</td><td>testIdentifiers</td><td/><td>0..*</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a><br/>(<a href="http://hl7.org/fhir/R4/search.html#token">token</a>)</td><td/><td><div><p>List of test identifiers. Metadata for each test is returned.</p>
</div></td></tr><tr><td>IN</td><td>testDateRange</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#Period">Period</a></td><td/><td><div><p>Metadata for each test performed during the range is returned.</p>
</div></td></tr><tr><td>IN</td><td>specimenIdentifiers</td><td/><td>0..*</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a><br/>(<a href="http://hl7.org/fhir/R4/search.html#token">token</a>)</td><td/><td><div><p>List of specimen identifiers. Metadata for each test based on a supplied specimen identifier is returned.</p>
</div></td></tr><tr><td>IN</td><td>ranges</td><td/><td>0..*</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a><br/>(<a href="http://hl7.org/fhir/R4/search.html#special">special</a>)</td><td/><td><div><p>List of regions for which additional study information is sought. If ranges are supplied, then each returned test will include studied and uncallable regions. Must be in zero-based RefSeq:Integer-range format (e.g. 'NC_000007.14:55174721-55174820').</p>
</div></td></tr><tr><td>OUT</td><td>tests</td><td/><td>0..*</td><td></td><td/><td/></tr><tr><td>OUT</td><td>tests.testId</td><td/><td>1..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td/><td><div><p>test identifier</p>
</div></td></tr><tr><td>OUT</td><td>tests.testDate</td><td/><td>1..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#dateTime">dateTime</a></td><td/><td><div><p>test date</p>
</div></td></tr><tr><td>OUT</td><td>tests.specimenId</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td/><td><div><p>specimen identifier</p>
</div></td></tr><tr><td>OUT</td><td>tests.genomicBuild</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#CodeableConcept">CodeableConcept</a></td><td/><td><div><p>preferred codes: https://loinc.org/LL1040-6/</p>
</div></td></tr><tr><td>OUT</td><td>tests.dnaChangeType</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#CodeableConcept">CodeableConcept</a></td><td/><td><div><p>preferred codes: http://www.sequenceontology.org/browser/current_release/term/SO:0002072</p>
</div></td></tr><tr><td>OUT</td><td>tests.regionStudied</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td/><td><div><p>List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'</p>
</div></td></tr><tr><td>OUT</td><td>tests.uncallableRegions</td><td/><td>0..1</td><td><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td/><td><div><p>List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'</p>
</div></td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="cg"/>
  </extension>
  <url
       value="http://hl7.org/fhir/uv/genomics-reporting/OperationDefinition/find-study-metadata"/>
  <version value="3.0.0-ballot"/>
  <name value="FindStudyMetadata"/>
  <title value="Find Study Metadata"/>
  <status value="active"/>
  <kind value="operation"/>
  <date value="2023-12-18T22:45:59+00:00"/>
  <publisher value="HL7 International / Clinical Genomics"/>
  <contact>
    <name value="HL7 International / Clinical Genomics"/>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/clingenomics"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="cg@lists.HL7.org"/>
    </telecom>
  </contact>
  <description
               value="Retrieve metadata about sequencing studies performed on a subject."/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
      <display value="World"/>
    </coding>
  </jurisdiction>
  <code value="match"/>
  <system value="false"/>
  <type value="true"/>
  <instance value="false"/>
  <parameter>
    <name value="subject"/>
    <use value="in"/>
    <min value="1"/>
    <max value="1"/>
    <documentation value="The subject of interest."/>
    <type value="string"/>
    <searchType value="reference"/>
  </parameter>
  <parameter>
    <name value="testIdentifiers"/>
    <use value="in"/>
    <min value="0"/>
    <max value="*"/>
    <documentation
                   value="List of test identifiers. Metadata for each test is returned."/>
    <type value="string"/>
    <searchType value="token"/>
  </parameter>
  <parameter>
    <name value="testDateRange"/>
    <use value="in"/>
    <min value="0"/>
    <max value="1"/>
    <documentation
                   value="Metadata for each test performed during the range is returned."/>
    <type value="Period"/>
  </parameter>
  <parameter>
    <name value="specimenIdentifiers"/>
    <use value="in"/>
    <min value="0"/>
    <max value="*"/>
    <documentation
                   value="List of specimen identifiers. Metadata for each test based on a supplied specimen identifier is returned."/>
    <type value="string"/>
    <searchType value="token"/>
  </parameter>
  <parameter>
    <name value="ranges"/>
    <use value="in"/>
    <min value="0"/>
    <max value="*"/>
    <documentation
                   value="List of regions for which additional study information is sought. If ranges are supplied, then each returned test will include studied and uncallable regions. Must be in zero-based RefSeq:Integer-range format (e.g. 'NC_000007.14:55174721-55174820')."/>
    <type value="string"/>
    <searchType value="special"/>
  </parameter>
  <parameter>
    <name value="tests"/>
    <use value="out"/>
    <min value="0"/>
    <max value="*"/>
    <part>
      <name value="testId"/>
      <use value="out"/>
      <min value="1"/>
      <max value="1"/>
      <documentation value="test identifier"/>
      <type value="string"/>
    </part>
    <part>
      <name value="testDate"/>
      <use value="out"/>
      <min value="1"/>
      <max value="1"/>
      <documentation value="test date"/>
      <type value="dateTime"/>
    </part>
    <part>
      <name value="specimenId"/>
      <use value="out"/>
      <min value="0"/>
      <max value="1"/>
      <documentation value="specimen identifier"/>
      <type value="string"/>
    </part>
    <part>
      <name value="genomicBuild"/>
      <use value="out"/>
      <min value="0"/>
      <max value="1"/>
      <documentation value="preferred codes: https://loinc.org/LL1040-6/"/>
      <type value="CodeableConcept"/>
    </part>
    <part>
      <name value="dnaChangeType"/>
      <use value="out"/>
      <min value="0"/>
      <max value="1"/>
      <documentation
                     value="preferred codes: http://www.sequenceontology.org/browser/current_release/term/SO:0002072"/>
      <type value="CodeableConcept"/>
    </part>
    <part>
      <name value="regionStudied"/>
      <use value="out"/>
      <min value="0"/>
      <max value="1"/>
      <documentation
                     value="List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'"/>
      <type value="string"/>
    </part>
    <part>
      <name value="uncallableRegions"/>
      <use value="out"/>
      <min value="0"/>
      <max value="1"/>
      <documentation
                     value="List of non-overlapping regions, each in zero-based RefSeq:Integer-range format; or 'unknown'"/>
      <type value="string"/>
    </part>
  </parameter>
</OperationDefinition>