Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

CodeSystem: Variant Confidence Status Codes

Official URL: http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs Version: 3.0.0-ballot
Active as of 2023-12-18 Computable Name: VariantConfidenceStatusCS

A code that represents the confidence of a true positive variant call.

This Code system is referenced in the content logical definition of the following value sets:

This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs defines the following codes:

CodeDisplayDefinition
high HighHigh confidence true positive variant call. Suitable for clinical reporting.
intermediate IntermediateCandidate true positive variant call. Unable to confirm without additional testing.
low LowHigh confidence false positive variant call.