This page is part of the Genetic Reporting Implementation Guide (v0.3.0: STU 1 Ballot 2) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Format(s):

Narrative view

GeneticCoordinateSystem

Base coordinate systems start and end measurements for variants

This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genetic-coordinate-system defines the following codes:

CodeDisplayDefinition
Interval Interval0-based numbering or interbase coordinate system, inclusive start, exclusive end
Variant method Variant method1-based [inclusive start, inclusive end] - with Alignment Method (VCF-like)
Alignment method Alignment method1-based [inclusive start, inclusive end] - with Variant Method (HGVS-like)