minimal Common Oncology Data Elements (mCODE) Implementation Guide
3.0.0 - STU3 Release United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v3.0.0: STU 3) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

Example Observation: gx-genomic-variant-fusion-met-alk

Generated Narrative: Observation

Resource Observation "gx-genomic-variant-fusion-met-alk"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: 69548-6 (LOINC#69548-6)

subject: Patient/gx-cancer-patient-adam-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

method: Sequencing (LOINC#LA26398-0)

component

code: 48018-6 (LOINC#48018-6)

value: MET (HUGO Gene Nomenclature Committee Genes#HGNC:7029; gene#4233)

component

code: 48018-6 (LOINC#48018-6)

value: ALK (HUGO Gene Nomenclature Committee Genes#HGNC:427; gene#238)

component

code: 48019-4 (LOINC#48019-4)

value: complex chromosomal rearrangement (#SO:0002062)

component

code: 48002-0 (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)