minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

Example Observation: genomic-region-studied-jenny-m

Generated Narrative

Resource "genomic-region-studied-jenny-m"

Profile: Genomic Region Studied Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: DNA region of interest panel (LOINC#53041-0)

subject: Patient/cancer-patient-jenny-m " M"

effective: 2018-03-15

issued: Mar 15, 2018 12:00:01 AM

Components

-CodeValue[x]
*Gene studied [ID] (LOINC#48018-6)BRCA1 (HUGO Gene Nomenclature#1100; HUGO Gene Nomenclature#1101 "BRCA2"; HUGO Gene Nomenclature#1748 "CDH1"; HUGO Gene Nomenclature#26144 "PALB2"; HUGO Gene Nomenclature#9588 "PTEN"; HUGO Gene Nomenclature#11389 "STK11"; HUGO Gene Nomenclature#11998 "TP53")

Notes:

Instance: genomic-region-studied-jenny-m
InstanceOf: GenomicRegionStudied
Title: "genomic-region-studied-jenny-m"
Description: "Extended example: example showing which regions were included in the genomics panel"
Usage: #example
* status = #final
* category = http://terminology.hl7.org/CodeSystem/observation-category#laboratory
* code = http://loinc.org#53041-0 "DNA region of interest panel"
* subject = Reference(cancer-patient-jenny-m)
* effectiveDateTime = "2018-03-15"
* issued = "2018-03-15T00:00:01+00:00"
* component.code = http://loinc.org#48018-6 "Gene studied [ID]"
* component.valueCodeableConcept.coding[0] = http://www.genenames.org#1100 "BRCA1"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#1101 "BRCA2"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#1748 "CDH1"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#26144 "PALB2"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#9588 "PTEN"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#11389 "STK11"
* component.valueCodeableConcept.coding[+] = http://www.genenames.org#11998 "TP53"