HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1
1.0.0 - STU1

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v1.0.0: STU 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Genetic Specimen Type Value Set - JSON Representation

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{
  "resourceType" : "ValueSet",
  "id" : "mcode-genetic-specimen-type-vs",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Genetic Specimen Type Value Set</h2><div><p>The type of specimen analyzed in a genetic test. The values are taken from code system http://terminology.hl7.org/CodeSystem/v2-0487, and represent a subset of HL7 Version 2 Table 0487 (http://hl7.org/fhir/v2/0487).</p>\n</div><ul><li>Include these codes as defined in <a href=\"http://hl7.org/fhir/R4/v2/0487/index.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-AMN\">AMN</a></td><td>Amniotic fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BIFL\">BIFL</a></td><td>Bile Fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BLD\">BLD</a></td><td>Whole blood</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BLDA\">BLDA</a></td><td>Blood arterial</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BLDCO\">BLDCO</a></td><td>Cord blood</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BLDV\">BLDV</a></td><td>Blood venous</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-BON\">BON</a></td><td>Bone</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-CSERU\">CSERU</a></td><td>Serum, Convalescent</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-CSF\">CSF</a></td><td>Cerebral spinal fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-CVM\">CVM</a></td><td>Cervical Mucus</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-DUFL\">DUFL</a></td><td>Duodenal fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-FBLOOD\">FBLOOD</a></td><td>Blood, Fetal</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-FGA\">FGA</a></td><td>Fluid, Abdomen</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-GENV\">GENV</a></td><td>Genital vaginal</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-HYDC\">HYDC</a></td><td>Fluid, Hydrocele</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-JNTFLD\">JNTFLD</a></td><td>Fluid, Joint</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-KIDFLD\">KIDFLD</a></td><td>Fluid, Kidney</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-LSAC\">LSAC</a></td><td>Fluid, Lumbar Sac</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-MAR\">MAR</a></td><td>Marrow</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-PAFL\">PAFL</a></td><td>Pancreatic fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-PCFL\">PCFL</a></td><td>Fluid, Pericardial</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-PLC\">PLC</a></td><td>Placenta</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-PLR\">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-SAL\">SAL</a></td><td>Saliva</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-SKN\">SKN</a></td><td>Skin</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-SMN\">SMN</a></td><td>Seminal fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-SNV\">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-SPT\">SPT</a></td><td>Sputum</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-TISS\">TISS</a></td><td>Tissue</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-VITF\">VITF</a></td><td>Vitreous Fluid</td><td/></tr><tr><td><a href=\"http://hl7.org/fhir/R4/v2/0487/index.html#v2-0487-WND\">WND</a></td><td>Wound</td><td/></tr></table></li></ul></div>"
  },
  "url" : "http://hl7.org/fhir/us/mcode/ValueSet/mcode-genetic-specimen-type-vs",
  "version" : "1.0.0",
  "name" : "GeneticSpecimenTypeVS",
  "title" : "Genetic Specimen Type Value Set",
  "status" : "active",
  "date" : "2020-03-18T15:32:10+00:00",
  "publisher" : "HL7 International Clinical Interoperability Council",
  "contact" : [
    {
      "name" : "HL7 International Clinical Interoperability Council",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/cic"
        },
        {
          "system" : "email",
          "value" : "ciclist@lists.HL7.org"
        }
      ]
    }
  ],
  "description" : "The type of specimen analyzed in a genetic test. The values are taken from code system http://terminology.hl7.org/CodeSystem/v2-0487, and represent a subset of HL7 Version 2 Table 0487 (http://hl7.org/fhir/v2/0487).",
  "compose" : {
    "include" : [
      {
        "system" : "http://terminology.hl7.org/CodeSystem/v2-0487",
        "concept" : [
          {
            "code" : "AMN",
            "display" : "Amniotic fluid"
          },
          {
            "code" : "BIFL",
            "display" : "Bile Fluid"
          },
          {
            "code" : "BLD",
            "display" : "Whole blood"
          },
          {
            "code" : "BLDA",
            "display" : "Blood arterial"
          },
          {
            "code" : "BLDCO",
            "display" : "Cord blood"
          },
          {
            "code" : "BLDV",
            "display" : "Blood venous"
          },
          {
            "code" : "BON",
            "display" : "Bone"
          },
          {
            "code" : "CSERU",
            "display" : "Serum, Convalescent"
          },
          {
            "code" : "CSF",
            "display" : "Cerebral spinal fluid"
          },
          {
            "code" : "CVM",
            "display" : "Cervical Mucus"
          },
          {
            "code" : "DUFL",
            "display" : "Duodenal fluid"
          },
          {
            "code" : "FBLOOD",
            "display" : "Blood, Fetal"
          },
          {
            "code" : "FGA",
            "display" : "Fluid, Abdomen"
          },
          {
            "code" : "GENV",
            "display" : "Genital vaginal"
          },
          {
            "code" : "HYDC",
            "display" : "Fluid, Hydrocele"
          },
          {
            "code" : "JNTFLD",
            "display" : "Fluid, Joint"
          },
          {
            "code" : "KIDFLD",
            "display" : "Fluid, Kidney"
          },
          {
            "code" : "LSAC",
            "display" : "Fluid, Lumbar Sac"
          },
          {
            "code" : "MAR",
            "display" : "Marrow"
          },
          {
            "code" : "PAFL",
            "display" : "Pancreatic fluid"
          },
          {
            "code" : "PCFL",
            "display" : "Fluid, Pericardial"
          },
          {
            "code" : "PLC",
            "display" : "Placenta"
          },
          {
            "code" : "PLR",
            "display" : "Pleural fluid (thoracentesis fluid)"
          },
          {
            "code" : "SAL",
            "display" : "Saliva"
          },
          {
            "code" : "SKN",
            "display" : "Skin"
          },
          {
            "code" : "SMN",
            "display" : "Seminal fluid"
          },
          {
            "code" : "SNV",
            "display" : "Fluid, synovial (Joint fluid)"
          },
          {
            "code" : "SPT",
            "display" : "Sputum"
          },
          {
            "code" : "TISS",
            "display" : "Tissue"
          },
          {
            "code" : "VITF",
            "display" : "Vitreous Fluid"
          },
          {
            "code" : "WND",
            "display" : "Wound"
          }
        ]
      }
    ]
  }
}