Left: | US Core Specimen Profile (http://hl7.org/fhir/us/core/StructureDefinition/us-core-specimen) |
Right: | Human Specimen Profile (http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-human-specimen) |
Error | StructureDefinition.url | Values for url differ: 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-specimen' vs 'http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-human-specimen' |
Error | StructureDefinition.version | Values for version differ: '7.0.0-ballot' vs '4.0.0-ballot' |
Information | StructureDefinition.name | Values for name differ: 'USCoreSpecimenProfile' vs 'HumanSpecimen' |
Information | StructureDefinition.title | Values for title differ: 'US Core Specimen Profile' vs 'Human Specimen Profile' |
Information | StructureDefinition.date | Values for date differ: '2023-10-17' vs '2024-04-10T14:01:17+00:00' |
Information | StructureDefinition.publisher | Values for publisher differ: 'HL7 International / Cross-Group Projects' vs 'HL7 International / Clinical Interoperability Council' |
Information | StructureDefinition.definition | Values for definition differ: '\-' vs 'A sample to be used for analysis.' |
Information | StructureDefinition.short | Values for short differ: 'Specimen identifier' vs 'External Identifier' |
Warning | Specimen.status | Elements differ in definition for mustSupport: 'false' vs 'true' |
Information | Specimen.type | Element minimum cardinalities differ: '1' vs '0' |
Error | Specimen.type | Unable to resolve left value set http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1099.54 at Specimen.type |
Information | StructureDefinition.short | Values for short differ: 'The patient where the specimen came from.' vs 'Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device' |
Information | StructureDefinition.definition | Values for definition differ: 'Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device.' vs 'The patient associated with this specimen.' |
Information | StructureDefinition.short | Values for short differ: '𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Collection details' vs 'Collection details' |
Warning | Specimen.collection | Elements differ in definition for mustSupport: 'false' vs 'true' |
Information | StructureDefinition.short | Values for short differ: '𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Specimen Source Site' vs 'Anatomical collection site' |
Information | StructureDefinition.comment | Values for comment differ: 'Body location from where a specimen was obtained. Examples include but are not limited to right internal jugular, left arm, and right eye.' vs 'If the use case requires BodySite to be handled as a separate resource instead of an inline coded element (e.g. to identify and track separately) then use the standard extension [bodySite](http://hl7.org/fhir/R4/extension-bodysite.html).' |
Warning | Specimen.collection.bodySite | Elements differ in definition for mustSupport: 'false' vs 'true' |
Information | StructureDefinition.short | Values for short differ: '𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Specimen condition acceptability' vs 'State of the specimen' |
Information | StructureDefinition.comment | Values for comment differ: 'Information regarding a specimen, including the container, that does not meet a laboratory's criteria for acceptability. Examples include but are not limited to hemolyzed, clotted, container leaking, and missing patient name. This may include information about the contents of the container, the container, and the label.' vs 'Specimen condition is an observation made about the specimen. It's a point-in-time assessment. It can be used to assess its quality or appropriateness for a specific test.' |
Name | Value | Comments | |
---|---|---|---|
abstract | false | ||
baseDefinition | http://hl7.org/fhir/StructureDefinition/Specimen | ||
copyright | Used by permission of HL7 International, all rights reserved Creative Commons License |
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date | 2023-10-17 | 2024-04-10T14:01:17+00:00 |
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description | This profile sets minimum expectations for the Specimen resource to record, search, and fetch "substances being sampled or tested. (e.g., nasopharyngeal swab, whole blood, serum, urine, wound swab)" associated with a patient to promote interoperability and adoption through common implementation. It identifies which core elements, extensions, vocabularies, and value sets **SHALL** be present in the resource and constrains the way the elements are used when using this profile. It provides the floor for standards development for specific use cases. | A specimen taken from a Patient for the purpose of oncology-related testing. The profile includes extensions to specify a more precise body site and an identifier of source body structure at that site (for example, a tumor identifier). |
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experimental | false |
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fhirVersion | 4.0.1 | ||
jurisdiction | |||
jurisdiction[0] | urn:iso:std:iso:3166#US | ||
kind | resource | ||
name | USCoreSpecimenProfile | HumanSpecimen |
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publisher | HL7 International / Cross-Group Projects | HL7 International / Clinical Interoperability Council |
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purpose | |||
status | active | ||
title | US Core Specimen Profile | Human Specimen Profile |
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type | Specimen | ||
url | http://hl7.org/fhir/us/core/StructureDefinition/us-core-specimen | http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-human-specimen |
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version | 7.0.0-ballot | 4.0.0-ballot |
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Name | L Flags | L Card. | L Type | L Description & Constraints | R Flags | R Card. | R Type | R Description & Constraints | Comments | ||||||||
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Specimen | 0..* | Specimen | Sample for analysis | 0..* | Specimen | Sample for analysis | |||||||||||
id | Σ | 0..1 | id | Logical id of this artifact | Σ | 0..1 | id | Logical id of this artifact | |||||||||
meta | Σ | 0..1 | Meta | Metadata about the resource | Σ | 0..1 | Meta | Metadata about the resource | |||||||||
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created | ?!Σ | 0..1 | uri | A set of rules under which this content was created | |||||||||
language | 0..1 | code | Language of the resource content Binding: ?? (preferred): A human language.
| 0..1 | code | Language of the resource content Binding: ?? (preferred): A human language.
| |||||||||||
text | 0..1 | Narrative | Text summary of the resource, for human interpretation | 0..1 | Narrative | Text summary of the resource, for human interpretation | |||||||||||
contained | 0..* | Resource | Contained, inline Resources | 0..* | Resource | Contained, inline Resources | |||||||||||
extension | 0..* | Extension | Additional content defined by implementations | 0..* | Extension | Additional content defined by implementations | |||||||||||
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored | ?! | 0..* | Extension | Extensions that cannot be ignored | |||||||||
identifier | SΣ | 0..* | Identifier | Specimen identifier | SΣ | 0..* | Identifier | External Identifier Slice: Unordered, Open by pattern:type | |||||||||
accessionIdentifier | Σ | 0..1 | Identifier | Identifier assigned by the lab | Σ | 0..1 | Identifier | Identifier assigned by the lab | |||||||||
status | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: ?? (required): Codes providing the status/availability of a specimen. | ?!SΣ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: ?? (required): Codes providing the status/availability of a specimen. |
| ||||||||
type | SΣ | 1..1 | CodeableConcept | Kind of material that forms the specimen Binding: ?? (extensible) | SΣ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: ?? (extensible) |
| ||||||||
subject | SΣ | 0..1 | Reference(US Core Patient Profile S | Group | Device | Substance | US Core Location Profile) | The patient where the specimen came from. | SΣ | 0..1 | Reference(Cancer Patient Profile) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device | |||||||||
receivedTime | Σ | 0..1 | dateTime | The time when specimen was received for processing | Σ | 0..1 | dateTime | The time when specimen was received for processing | |||||||||
parent | 0..* | Reference(Specimen) | Specimen from which this specimen originated | 0..* | Reference(Specimen) | Specimen from which this specimen originated | |||||||||||
request | 0..* | Reference(ServiceRequest) | Why the specimen was collected | 0..* | Reference(ServiceRequest) | Why the specimen was collected | |||||||||||
collection | 0..1 | BackboneElement | 𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Collection details | S | 0..1 | BackboneElement | Collection details |
| |||||||||
id | 0..1 | string | Unique id for inter-element referencing | 0..1 | string | Unique id for inter-element referencing | |||||||||||
extension | 0..* | Extension | Additional content defined by implementations | 0..* | Extension | Additional content defined by implementations | |||||||||||
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | |||||||||
collector | Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen | Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen | |||||||||
collected[x] | Σ | 0..1 | dateTime, Period | Collection time | Σ | 0..1 | dateTime, Period | Collection time | |||||||||
duration | Σ | 0..1 | Duration | How long it took to collect specimen | Σ | 0..1 | Duration | How long it took to collect specimen | |||||||||
quantity | 0..1 | ?? | The quantity of specimen collected | 0..1 | ?? | The quantity of specimen collected | |||||||||||
method | 0..1 | CodeableConcept | Technique used to perform collection Binding: ?? (example): The technique that is used to perform the procedure. | 0..1 | CodeableConcept | Technique used to perform collection Binding: ?? (example): The technique that is used to perform the procedure. | |||||||||||
bodySite | 0..1 | CodeableConcept | 𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Specimen Source Site Binding: ?? (extensible) | S | 0..1 | CodeableConcept | Anatomical collection site Binding: ?? (example): Codes describing anatomical locations. May include laterality. |
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id | 0..1 | string | Unique id for inter-element referencing |
| |||||||||||||
Slices for extension | S | 0..* | Extension | Extension Slice: Unordered, Open by value:url |
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coding | Σ | 0..* | Coding | Code defined by a terminology system |
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text | Σ | 0..1 | string | Plain text representation of the concept |
| ||||||||||||
fastingStatus[x] | Σ | 0..1 | CodeableConcept, Duration | Whether or how long patient abstained from food and/or drink Binding: ?? (extensible): Codes describing the fasting status of the patient. | Σ | 0..1 | CodeableConcept, Duration | Whether or how long patient abstained from food and/or drink Binding: ?? (extensible): Codes describing the fasting status of the patient. | |||||||||
processing | 0..* | BackboneElement | Processing and processing step details | 0..* | BackboneElement | Processing and processing step details | |||||||||||
id | 0..1 | string | Unique id for inter-element referencing | 0..1 | string | Unique id for inter-element referencing | |||||||||||
extension | 0..* | Extension | Additional content defined by implementations | 0..* | Extension | Additional content defined by implementations | |||||||||||
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | |||||||||
description | 0..1 | string | Textual description of procedure | 0..1 | string | Textual description of procedure | |||||||||||
procedure | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: ?? (example): Type indicating the technique used to process the specimen. | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: ?? (example): Type indicating the technique used to process the specimen. | |||||||||||
additive | 0..* | Reference(Substance) | Material used in the processing step | 0..* | Reference(Substance) | Material used in the processing step | |||||||||||
time[x] | 0..1 | dateTime, Period | Date and time of specimen processing | 0..1 | dateTime, Period | Date and time of specimen processing | |||||||||||
container | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||||||||
id | 0..1 | string | Unique id for inter-element referencing | 0..1 | string | Unique id for inter-element referencing | |||||||||||
extension | 0..* | Extension | Additional content defined by implementations | 0..* | Extension | Additional content defined by implementations | |||||||||||
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | |||||||||
identifier | Σ | 0..* | Identifier | Id for the container | Σ | 0..* | Identifier | Id for the container | |||||||||
description | 0..1 | string | Textual description of the container | 0..1 | string | Textual description of the container | |||||||||||
type | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: ?? (example): Type of specimen container. | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: ?? (example): Type of specimen container. | |||||||||||
capacity | 0..1 | ?? | Container volume or size | 0..1 | ?? | Container volume or size | |||||||||||
specimenQuantity | 0..1 | ?? | Quantity of specimen within container | 0..1 | ?? | Quantity of specimen within container | |||||||||||
additive[x] | 0..1 | CodeableConcept, Reference(Substance) | Additive associated with container Binding: ?? (example): Substance added to specimen container. | 0..1 | CodeableConcept, Reference(Substance) | Additive associated with container Binding: ?? (example): Substance added to specimen container. | |||||||||||
condition | Σ | 0..* | CodeableConcept | 𝗔𝗗𝗗𝗜𝗧𝗜𝗢𝗡𝗔𝗟 𝗨𝗦𝗖𝗗𝗜: Specimen condition acceptability Binding: ?? (extensible) | Σ | 0..* | CodeableConcept | State of the specimen Binding: ?? (extensible): Codes describing the state of the specimen. | |||||||||
note | 0..* | Annotation | Comments | 0..* | Annotation | Comments | |||||||||||
Documentation for this format |