minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0-ballot - STU4 Ballot United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v4.0.0-ballot: STU4 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 3.0.0. For a full list of available versions, see the Directory of published versions

Example Observation: gx-genomic-variant-fusion-ETV6-RUNX1-brian-l

Generated Narrative: Observation

Resource Observation "gx-genomic-variant-fusion-ETV6-RUNX1-brian-l"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: Genetic var assess (LOINC#69548-6)

subject: Patient/cancer-patient-brian-l " L"

effective: 2024-01-08

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

method: Karyotyping (LOINC#LA26406-1)

component

code: Gene studied ID (LOINC#48018-6)

value: ETV6 (HUGO Gene Nomenclature Committee Genes#HGNC:3495)

component

code: Gene studied ID (LOINC#48018-6)

value: RUNx1 (HUGO Gene Nomenclature Committee Genes#HGNC:10471)

component

code: DNA Change Type (LOINC#48019-4)

value: chromosomal_translocation (#SO:1000044)

component

code: Genomic source class (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)