minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0-ballot - STU4 Ballot United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v4.0.0-ballot: STU4 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 3.0.0. For a full list of available versions, see the Directory of published versions

Example Observation: genomic-variant-germline-deletion

Generated Narrative: Observation

Resource Observation "genomic-variant-germline-deletion"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: Genetic var assess (LOINC#69548-6)

subject: Patient/cancer-patient-john-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

interpretation: Positive (qualifier value) (SNOMED CT#10828004)

method: Sequencing (LOINC#LA26398-0)

component

code: Gene studied ID (LOINC#48018-6)

value: BRCA1 (HUGO Gene Nomenclature Committee Genes#HGNC:1100)

component

code: Struct var HGVS name (LOINC#81290-9)

value: NG_005905.2:g.126148_126152del (Human Genome Variation Society nomenclature#NG_005905.2:g.126148_126152del)

component

code: Genomic source class (LOINC#48002-0)

value: Germline (LOINC#LA6683-2)