Observation-example-genetics-1.xml

Genetics example 1 (id = "example-genetics-1")

<?xml version="1.0" encoding="UTF-8"?>

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-genetics-1"/> <!--   extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariantName"
   >
    <valueCodeableConcept> 
      <text value="NG_007726.3:g.146252T&gt;G" />
    </valueCodeableConcept>
  </extension   --><text> <status value="extensions"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px
       solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource &quot;example-genetics-1&quot; </p> </div> <p> <b> Gene</b> : EGFR <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/3.1.0/CodeSystem-v3-hgnc.html">HUGO Gene Nomenclature</a> #3236)</span> </p> <p> <b> DNARegionName</b> : Exon 21</p> <p> <b> GenomicSourceClass</b> : somatic <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a> #LA6684-0)</span> </p> <p> <b> status</b> : final</p> <p> <b> code</b> : The material on this page will be removed in a future release. This content is deprecated
         and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting
         Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance.
         Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
         associated observations that can be reported with a molecular genetics analysis result.
         <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://loinc.org/">LOINC</a> #55233-1)</span> </p> <p> <b> subject</b> : <a href="patient-example.html">Patient/example: Molecular Lab Patient ID: HOSP-23456</a>  &quot;Peter CHALMERS&quot;</p> <p> <b> effective</b> : 2013-04-03T15:30:10+01:00</p> <p> <b> performer</b> : <a href="practitioner-example.html">Practitioner/example: Molecular Diagnostics Laboratory</a>  &quot;Adam CAREFUL&quot;</p> <p> <b> value</b> : Positive <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #10828004)</span> </p> <p> <b> device</b> : <a href="device-example.html">Device/example</a> </p> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://www.genenames.org"/> 
        <code value="3236"/> 
        <display value="EGFR"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName">
    <valueString value="Exon 21"/> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://loinc.org"/> 
        <code value="LA6684-0"/> 
        <display value="somatic"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <status value="final"/> 
  <code> 
    <coding> 
      <system value="http://loinc.org"/> 
      <code value="55233-1"/> 
      <display value="The material on this page will be removed in a future release. This content is deprecated
       and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting
       Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance.
       Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/> 
    </coding> 
  </code> 
  <subject> 
    <reference value="Patient/example"/> 
    <display value="Molecular Lab Patient ID: HOSP-23456"/> 
  </subject> 
  <effectiveDateTime value="2013-04-03T15:30:10+01:00"/> 
  <performer> 
    <reference value="Practitioner/example"/> 
    <display value="Molecular Diagnostics Laboratory"/> 
  </performer> 
  <valueCodeableConcept> 
    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="10828004"/> 
      <display value="Positive"/> 
    </coding> 
  </valueCodeableConcept> 
  <!--   
  <specimen>
    <reference value="Specimen/genetics-example1-somatic"/>
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/>
  </specimen>
     -->
  <device> 
    <reference value="Device/example"/> 
  </device>   

</Observation>