Release 4

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Specimen-example-isolate.ttl

Orders and Observations Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner

Raw Turtle (+ also see Turtle/RDF Format Specification)

Bacterial Isolate from Stool sample

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Specimen/isolate> a fhir:Specimen;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "isolate"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: isolate</p><p><b>contained</b>: </p><p><b>accessionIdentifier</b>: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span>(Details : {SNOMED CT code '429951000124103' = 'Bacterial isolate specimen (specimen)', given as 'Bacterial isolate specimen'})</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>receivedTime</b>: 18/08/2015 7:03:00 AM</p><p><b>parent</b>: id: stool; X352356; status: unavailable; Stool specimen <span>(Details : {SNOMED CT code '119339001' = 'Stool specimen', given as 'Stool specimen'})</span>; receivedTime: 16/08/2015 7:03:00 AM</p><h3>Collections</h3><table><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a>Practitioner/f202</a></td><td>16/08/2015 7:03:00 AM</td><td>Plates, Blood Agar <span>(Details : {http://terminology.hl7.org/CodeSystem/v2-0488 code 'BAP' = 'Plates, Blood Agar)</span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>"
  ];
  fhir:DomainResource.contained [
     a fhir:Specimen;
     fhir:index 0;
     fhir:Resource.id [ fhir:value "stool" ];
     fhir:Specimen.accessionIdentifier [
       fhir:Identifier.system [ fhir:value "http://lab.acme.org/specimens/2015" ];
       fhir:Identifier.value [ fhir:value "X352356" ]
     ];
     fhir:Specimen.status [ fhir:value "unavailable" ];
     fhir:Specimen.type [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:119339001;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "119339001" ];
         fhir:Coding.display [ fhir:value "Stool specimen" ]
       ]
     ];
     fhir:Specimen.subject [
       fhir:link <http://hl7.org/fhir/Patient/example>;
       fhir:Reference.reference [ fhir:value "Patient/example" ]
     ];
     fhir:Specimen.receivedTime [ fhir:value "2015-08-16T07:03:00Z"^^xsd:dateTime ];
     fhir:Specimen.collection [
       fhir:Specimen.collection.collector [
         fhir:Reference.display [ fhir:value "Patient" ]
       ];
       fhir:Specimen.collection.collectedDateTime [ fhir:value "2011-08-16T06:15:00Z"^^xsd:dateTime ];
       fhir:Specimen.collection.method [
         fhir:CodeableConcept.coding [
           fhir:index 0;
           fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0488" ];
           fhir:Coding.code [ fhir:value "LNV" ]
         ]
       ]
     ]
  ];
  fhir:Specimen.accessionIdentifier [
     fhir:Identifier.system [ fhir:value "http://lab.acme.org/specimens/2011" ];
     fhir:Identifier.value [ fhir:value "X352356-ISO1" ]
  ];
  fhir:Specimen.status [ fhir:value "available"];
  fhir:Specimen.type [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:429951000124103;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "429951000124103" ];
       fhir:Coding.display [ fhir:value "Bacterial isolate specimen" ]
     ]
  ];
  fhir:Specimen.subject [
     fhir:link <http://hl7.org/fhir/Patient/example>;
     fhir:Reference.reference [ fhir:value "Patient/example" ]
  ];
  fhir:Specimen.receivedTime [ fhir:value "2015-08-18T07:03:00Z"^^xsd:dateTime];
  fhir:Specimen.parent [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "#stool" ]
  ];
  fhir:Specimen.collection [
     fhir:Specimen.collection.collector [
       fhir:link <http://hl7.org/fhir/Practitioner/f202>;
       fhir:Reference.reference [ fhir:value "Practitioner/f202" ]
     ];
     fhir:Specimen.collection.collectedDateTime [ fhir:value "2015-08-16T07:03:00Z"^^xsd:dateTime ];
     fhir:Specimen.collection.method [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0488" ];
         fhir:Coding.code [ fhir:value "BAP" ]
       ]
     ]
  ];
  fhir:Specimen.note [
     fhir:index 0;
     fhir:Annotation.text [ fhir:value "Patient dropped off specimen" ]
  ] .

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/f202> a fhir:Practitioner .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Specimen/isolate.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Specimen/isolate.ttl> .

# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.