Specimen - FHIR v5.0.0-cibuild

FHIR Extensions Pack v5.1.0 (2024-04-27)

This page is part of the FHIR Core Extensions Registry (v5.1.0: Release 5.1) based on FHIR (HL7® FHIR® Standard) v5.0.0. This is the current published version. For a full list of available versions, see the Directory of published versions

10.8.31 Resource Specimen - Conversions

Orders and Observations

Work Group

Maturity Level: N/A

Standards Status: Informative

Security Category: N/A

Compartments: N/A

Following are maps for converting between the equivalent R4B resource and this R5 resource.

Maps to Specimen

FML Conversion for Specimen: R5 to R4 (Ready for Use/Trial Use)

/// url = 'http://hl7.org/fhir/StructureMap/Specimen5to4'
/// name = 'Specimen5to4'
/// title = 'FML Conversion for Specimen: R5 to R4'
/// status = 'active'

conceptmap "SpecimenStatus" {
  prefix s = "http://hl7.org/fhir/specimen-status"
  prefix t = "http://hl7.org/fhir/4.0/specimen-status"

  s:available - t:available
  s:unavailable - t:unavailable
  s:unsatisfactory - t:unsatisfactory
  s:"entered-in-error" - t:"entered-in-error"
}

uses "http://hl7.org/fhir/StructureDefinition/Specimen" alias SpecimenR5 as source
uses "http://hl7.org/fhir/4.0/StructureDefinition/Specimen" alias SpecimenR4 as target

imports "http://hl7.org/fhir/StructureMap/*5to4"

group Specimen(source src : SpecimenR5, target tgt : SpecimenR4) extends DomainResource <<type+>> {
  src.identifier -> tgt.identifier;
  src.accessionIdentifier -> tgt.accessionIdentifier;
  src.status as v -> tgt.status = translate(v, '#SpecimenStatus', 'code');
  src.type -> tgt.type;
  src.subject -> tgt.subject;
  src.receivedTime -> tgt.receivedTime;
  src.parent -> tgt.parent;
  src.request -> tgt.request;
  src.collection as s -> tgt.collection as t then SpecimenCollection(s, t); // src.combined as v -> tgt.combined = translate(v, '#PublicationStatus', 'code');
  src.processing as s -> tgt.processing as t then SpecimenProcessing(s, t);
  src.container as s -> tgt.container as t then SpecimenContainer(s, t);
  src.condition -> tgt.condition;
  src.note -> tgt.note;
}

// group SpecimenFeature(source src, target tgt) extends BackboneElement {
// src.type -> tgt.type;
// src.description -> tgt.description;
// }
group SpecimenCollection(source src, target tgt) extends BackboneElement {
  src.collector -> tgt.collector;
  src.collected : dateTime -> tgt.collected;
  src.collected : Period -> tgt.collected;
  src.duration -> tgt.duration;
  src.quantity -> tgt.quantity;
  src.method -> tgt.method;
  src.bodySite -> tgt.bodySite; // src.device -> tgt.device;
  src.fastingStatus : CodeableConcept -> tgt.fastingStatus;
  src.fastingStatus : Duration -> tgt.fastingStatus;
}

group SpecimenProcessing(source src, target tgt) extends BackboneElement {
  src.description -> tgt.description;
  src.method -> tgt.procedure;
  src.additive -> tgt.additive;
  src.time : dateTime -> tgt.time;
  src.time : Period -> tgt.time;
}

group SpecimenContainer(source src, target tgt) extends BackboneElement {
  src.specimenQuantity -> tgt.specimenQuantity; // src.device -> tgt.device;
}

FML Conversion for Specimen: R5 to R4B (Ready for Use/Trial Use)

/// url = 'http://hl7.org/fhir/StructureMap/Specimen5to4B'
/// name = 'Specimen5to4B'
/// title = 'FML Conversion for Specimen: R5 to R4B'
/// status = 'active'

conceptmap "SpecimenStatus" {
  prefix s = "http://hl7.org/fhir/specimen-status"
  prefix t = "http://hl7.org/fhir/4.3/specimen-status"

  s:available - t:available
  s:unavailable - t:unavailable
  s:unsatisfactory - t:unsatisfactory
  s:"entered-in-error" - t:"entered-in-error"
}

uses "http://hl7.org/fhir/StructureDefinition/Specimen" alias SpecimenR5 as source
uses "http://hl7.org/fhir/4.3/StructureDefinition/Specimen" alias SpecimenR4B as target

imports "http://hl7.org/fhir/StructureMap/*5to4B"

group Specimen(source src : SpecimenR5, target tgt : SpecimenR4B) extends DomainResource <<type+>> {
  src.identifier -> tgt.identifier;
  src.accessionIdentifier -> tgt.accessionIdentifier;
  src.status as v -> tgt.status = translate(v, '#SpecimenStatus', 'code');
  src.type -> tgt.type;
  src.subject -> tgt.subject;
  src.receivedTime -> tgt.receivedTime;
  src.parent -> tgt.parent;
  src.request -> tgt.request;
  src.collection as s -> tgt.collection as t then SpecimenCollection(s, t); // src.combined as v -> tgt.combined = translate(v, '#PublicationStatus', 'code');
  src.processing as s -> tgt.processing as t then SpecimenProcessing(s, t);
  src.container as s -> tgt.container as t then SpecimenContainer(s, t);
  src.condition -> tgt.condition;
  src.note -> tgt.note;
}

// group SpecimenFeature(source src, target tgt) extends BackboneElement {
// src.type -> tgt.type;
// src.description -> tgt.description;
// }
group SpecimenCollection(source src, target tgt) extends BackboneElement {
  src.collector -> tgt.collector;
  src.collected : dateTime -> tgt.collected;
  src.collected : Period -> tgt.collected;
  src.duration -> tgt.duration;
  src.quantity -> tgt.quantity;
  src.method -> tgt.method;
  src.bodySite -> tgt.bodySite; // src.device -> tgt.device;
  src.fastingStatus : CodeableConcept -> tgt.fastingStatus;
  src.fastingStatus : Duration -> tgt.fastingStatus;
}

group SpecimenProcessing(source src, target tgt) extends BackboneElement {
  src.description -> tgt.description;
  src.method -> tgt.procedure;
  src.additive -> tgt.additive;
  src.time : dateTime -> tgt.time;
  src.time : Period -> tgt.time;
}

group SpecimenContainer(source src, target tgt) extends BackboneElement {
  src.specimenQuantity -> tgt.specimenQuantity; // src.device -> tgt.device;
}

Maps from Specimen

FML Conversion for Specimen: R4B to R5 (Ready for Use/Trial Use)

/// url = 'http://hl7.org/fhir/StructureMap/Specimen4Bto5'
/// name = 'Specimen4Bto5'
/// title = 'FML Conversion for Specimen: R4B to R5'
/// status = 'active'

conceptmap "SpecimenStatus" {
  prefix s = "http://hl7.org/fhir/4.3/specimen-status"
  prefix t = "http://hl7.org/fhir/specimen-status"

  s:available - t:available
  s:unavailable - t:unavailable
  s:unsatisfactory - t:unsatisfactory
  s:"entered-in-error" - t:"entered-in-error"
}

uses "http://hl7.org/fhir/4.3/StructureDefinition/Specimen" alias SpecimenR4B as source
uses "http://hl7.org/fhir/StructureDefinition/Specimen" alias SpecimenR5 as target

imports "http://hl7.org/fhir/StructureMap/*4Bto5"

group Specimen(source src : SpecimenR4B, target tgt : SpecimenR5) extends DomainResource <<type+>> {
  src.identifier -> tgt.identifier;
  src.accessionIdentifier -> tgt.accessionIdentifier;
  src.status as v -> tgt.status = translate(v, '#SpecimenStatus', 'code');
  src.type -> tgt.type;
  src.subject -> tgt.subject;
  src.receivedTime -> tgt.receivedTime;
  src.parent -> tgt.parent;
  src.request -> tgt.request;
  src.collection as s -> tgt.collection as t then SpecimenCollection(s, t); // src.combined as v -> tgt.combined = translate(v, '#PublicationStatus', 'code');
  src.processing as s -> tgt.processing as t then SpecimenProcessing(s, t);
  src.container as s -> tgt.container as t then SpecimenContainer(s, t);
  src.condition -> tgt.condition;
  src.note -> tgt.note;
}

// group SpecimenFeature(source src, target tgt) extends BackboneElement {
// src.type -> tgt.type;
// src.description -> tgt.description;
// }
group SpecimenCollection(source src, target tgt) extends BackboneElement {
  src.collector -> tgt.collector;
  src.collected : dateTime -> tgt.collected;
  src.collected : Period -> tgt.collected;
  src.duration -> tgt.duration;
  src.quantity -> tgt.quantity;
  src.method -> tgt.method;
  src.bodySite -> tgt.bodySite; // src.device -> tgt.device;
  src.fastingStatus : CodeableConcept -> tgt.fastingStatus;
  src.fastingStatus : Duration -> tgt.fastingStatus;
}

group SpecimenProcessing(source src, target tgt) extends BackboneElement {
  src.description -> tgt.description;
  src.procedure -> tgt.method;
  src.additive -> tgt.additive;
  src.time : dateTime -> tgt.time;
  src.time : Period -> tgt.time;
}

group SpecimenContainer(source src, target tgt) extends BackboneElement {
  src.specimenQuantity -> tgt.specimenQuantity; // src.device -> tgt.device;
}

FML Conversion for Specimen: R4 to R5 (Ready for Use/Trial Use)

/// url = 'http://hl7.org/fhir/StructureMap/Specimen4to5'
/// name = 'Specimen4to5'
/// title = 'FML Conversion for Specimen: R4 to R5'
/// status = 'active'

conceptmap "SpecimenStatus" {
  prefix s = "http://hl7.org/fhir/4.0/specimen-status"
  prefix t = "http://hl7.org/fhir/specimen-status"

  s:available - t:available
  s:unavailable - t:unavailable
  s:unsatisfactory - t:unsatisfactory
  s:"entered-in-error" - t:"entered-in-error"
}

uses "http://hl7.org/fhir/4.0/StructureDefinition/Specimen" alias SpecimenR4 as source
uses "http://hl7.org/fhir/StructureDefinition/Specimen" alias SpecimenR5 as target

imports "http://hl7.org/fhir/StructureMap/*4to5"

group Specimen(source src : SpecimenR4, target tgt : SpecimenR5) extends DomainResource <<type+>> {
  src.identifier -> tgt.identifier;
  src.accessionIdentifier -> tgt.accessionIdentifier;
  src.status as v -> tgt.status = translate(v, '#SpecimenStatus', 'code');
  src.type -> tgt.type;
  src.subject -> tgt.subject;
  src.receivedTime -> tgt.receivedTime;
  src.parent -> tgt.parent;
  src.request -> tgt.request;
  src.collection as s -> tgt.collection as t then SpecimenCollection(s, t); // src.combined as v -> tgt.combined = translate(v, '#PublicationStatus', 'code');
  src.processing as s -> tgt.processing as t then SpecimenProcessing(s, t);
  src.container as s -> tgt.container as t then SpecimenContainer(s, t);
  src.condition -> tgt.condition;
  src.note -> tgt.note;
}

// group SpecimenFeature(source src, target tgt) extends BackboneElement {
// src.type -> tgt.type;
// src.description -> tgt.description;
// }
group SpecimenCollection(source src, target tgt) extends BackboneElement {
  src.collector -> tgt.collector;
  src.collected : dateTime -> tgt.collected;
  src.collected : Period -> tgt.collected;
  src.duration -> tgt.duration;
  src.quantity -> tgt.quantity;
  src.method -> tgt.method;
  src.bodySite -> tgt.bodySite; // src.device -> tgt.device;
  src.fastingStatus : CodeableConcept -> tgt.fastingStatus;
  src.fastingStatus : Duration -> tgt.fastingStatus;
}

group SpecimenProcessing(source src, target tgt) extends BackboneElement {
  src.description -> tgt.description;
  src.procedure -> tgt.method;
  src.additive -> tgt.additive;
  src.time : dateTime -> tgt.time;
  src.time : Period -> tgt.time;
}

group SpecimenContainer(source src, target tgt) extends BackboneElement {
  src.specimenQuantity -> tgt.specimenQuantity; // src.device -> tgt.device;
}