This page is part of the FHIR Core Extensions Registry (v5.1.0: Release 5.1) based on FHIR (HL7® FHIR® Standard) v5.0.0. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: FML Conversion for MolecularSequence: R5 to R4 - XML Representation

Raw xml | Download

<StructureMap xmlns="http://hl7.org/fhir">
  <id value="MolecularSequence5to4"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><pre class="fml">
<span style="color: #cc00cc">/// <b>url</b> = </span><span style="color: blue">'http://hl7.org/fhir/StructureMap/MolecularSequence5to4'</span>
<span style="color: #cc00cc">/// <b>name</b> = </span><span style="color: blue">'MolecularSequence5to4'</span>
<span style="color: #cc00cc">/// <b>title</b> = </span><span style="color: blue">'FML Conversion for MolecularSequence: R5 to R4'</span>
<span style="color: #cc00cc">/// <b>status</b> = </span><span style="color: blue">'active'</span>

<b>conceptmap</b><span style="color: navy"> &quot;</span>orientationType<span style="color: navy">&quot; {
</span><b>  prefix </b>s<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R5/codesystem-orientation-type.html" title="orientation Type">http://hl7.org/fhir/orientation-type</a><span style="color: navy">&quot;
</span><b>  prefix </b>t<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R4/codesystem-orientation-type.html" title="orientationType">http://hl7.org/fhir/4.0/orientation-type</a><span style="color: navy">&quot;
</span>
  s<span style="color: navy">:</span>sense <b>-</b> t<span style="color: navy">:</span>sense
  s<span style="color: navy">:</span>antisense <b>-</b> t<span style="color: navy">:</span>antisense
<span style="color: navy">}

</span><b>conceptmap</b><span style="color: navy"> &quot;</span>sequenceType<span style="color: navy">&quot; {
</span><b>  prefix </b>s<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R5/codesystem-sequence-type.html" title="sequence Type">http://hl7.org/fhir/sequence-type</a><span style="color: navy">&quot;
</span><b>  prefix </b>t<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R4/codesystem-sequence-type.html" title="sequenceType">http://hl7.org/fhir/4.0/sequence-type</a><span style="color: navy">&quot;
</span>
  s<span style="color: navy">:</span>aa <b>-</b> t<span style="color: navy">:</span>aa
  s<span style="color: navy">:</span>dna <b>-</b> t<span style="color: navy">:</span>dna
  s<span style="color: navy">:</span>rna <b>-</b> t<span style="color: navy">:</span>rna
<span style="color: navy">}

</span><b>conceptmap</b><span style="color: navy"> &quot;</span>strandType<span style="color: navy">&quot; {
</span><b>  prefix </b>s<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R5/codesystem-strand-type.html" title="strand Type">http://hl7.org/fhir/strand-type</a><span style="color: navy">&quot;
</span><b>  prefix </b>t<span style="color: navy"> = &quot;</span><a href="http://hl7.org/fhir/R4/codesystem-strand-type.html" title="strandType">http://hl7.org/fhir/4.0/strand-type</a><span style="color: navy">&quot;
</span>
  s<span style="color: navy">:</span>watson <b>-</b> t<span style="color: navy">:</span>watson
  s<span style="color: navy">:</span>crick <b>-</b> t<span style="color: navy">:</span>crick
<span style="color: navy">}

</span><b>uses</b><span style="color: navy"> &quot;</span><a href="http://hl7.org/fhir/R5/molecularsequence.html" title="MolecularSequence">http://hl7.org/fhir/StructureDefinition/MolecularSequence</a><span style="color: navy">&quot; </span><b>alias </b>MolecularSequenceR5 <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> &quot;</span><a href="http://hl7.org/fhir/R4/molecularsequence.html" title="MolecularSequence">http://hl7.org/fhir/4.0/StructureDefinition/MolecularSequence</a><span style="color: navy">&quot; </span><b>alias </b>MolecularSequenceR4 <b>as </b><b>target</b>

<b>imports</b><span style="color: navy"> &quot;</span>http://hl7.org/fhir/StructureMap/*5to4<span style="color: navy">&quot;
</span>
<b>group </b>MolecularSequence<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>MolecularSequenceR5, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>MolecularSequenceR4<span style="color: navy">)</span><b> extends </b>DomainResource<b> &lt;&lt;type+&gt;&gt;</b><span style="color: navy"> {
</span>  src.identifier<span style="color: navy"><b> -&gt; </b></span>tgt.identifier<span style="color: navy">;</span>
  src.type<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -&gt; </b></span>tgt.type = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#sequenceType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
  src.subject<span style="color: navy"><b> -&gt; </b></span>tgt.patient<span style="color: navy">;</span>
  src.specimen<span style="color: navy"><b> -&gt; </b></span>tgt.specimen<span style="color: navy">;</span> <span style="color: navy">// </span><span style="color: green">src.focus -&gt; tgt.focus;</span>
  src.device<span style="color: navy"><b> -&gt; </b></span>tgt.device<span style="color: navy">;</span>
  src.performer<span style="color: navy"><b> -&gt; </b></span>tgt.performer<span style="color: navy">;</span>
  src.relative<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -&gt; </b></span>tgt.referenceSeq<b> as </b><span style="color: maroon">t</span><b> then </b>MolecularSequenceReferenceSeq<span style="color: navy">(</span><span style="color: maroon">s</span><span style="color: navy">, </span><span style="color: maroon">t</span><span style="color: navy">)</span><span style="color: navy">;</span> <span style="color: navy">// </span><span style="color: green">src.literal -&gt; tgt.literal;</span>
  src.relative<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -&gt; </b></span>tgt.variant<b> as </b><span style="color: maroon">t</span><b> then </b>MolecularSequenceVariant<span style="color: navy">(</span><span style="color: maroon">s</span><span style="color: navy">, </span><span style="color: maroon">t</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}

</span><b>group </b>MolecularSequenceReferenceSeq<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span>  src.startingSequence<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -&gt; </b></span><span style="color: maroon">tgt</span><b> then</b><span style="color: navy"> {
</span>    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21254-0'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'1'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 1'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21255-7'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'2'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 2'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21256-5'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'3'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 3'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21257-3'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'4'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 4'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21258-1'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'5'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 5'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21259-9'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'6'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 6'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21260-7'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'7'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 7'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21261-5'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'8'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 8'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21262-3'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'9'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 9'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21263-1'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'10'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 10'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21264-9'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'11'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 11'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21265-6'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'12'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 12'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21266-4'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'13'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 13'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21267-2'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'14'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 14'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21268-0'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'15'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 15'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21269-8'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'16'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 16'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21270-6'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'17'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 17'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21271-4'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'18'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 18'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21272-2'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'19'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 19'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21273-0'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'20'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 20'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21274-8'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'21'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 21'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21275-5'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'22'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome 22'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21276-3'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'X'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome X'</span><span style="color: navy">;</span>
    s.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'LA21277-1'<span style="color: navy"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'Y'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'chromosome Y'</span><span style="color: navy">;</span>
    s.sequence<span style="color: navy"> : </span>CodeableConcept<span style="color: navy"><b> -&gt; </b></span>tgt.referenceSeqId<span style="color: navy">;</span>
    s.sequence<span style="color: navy"> : </span>Reference<span style="color: navy"><b> -&gt; </b></span>tgt.referenceSeqPointer<span style="color: navy">;</span>
    s.sequence<span style="color: navy"> : </span>string<span style="color: navy"><b> -&gt; </b></span>tgt.referenceSeqString<span style="color: navy">;</span>
    s.windowStart<span style="color: navy"><b> -&gt; </b></span>tgt.windowStart<span style="color: navy">;</span>
    s.windowEnd<span style="color: navy"><b> -&gt; </b></span>tgt.windowEnd<span style="color: navy">;</span>
    s.orientation<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -&gt; </b></span>tgt.orientation = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#orientationType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
    s.strand<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -&gt; </b></span>tgt.strand = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#strandType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
  <span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}

</span><b>group </b>MolecularSequenceVariant<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span>  src.edit<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -&gt; </b></span><span style="color: maroon">tgt</span><b> then</b><span style="color: navy"> {
</span>    s.start<span style="color: navy"><b> -&gt; </b></span>tgt.start<span style="color: navy">;</span>
    s.end<span style="color: navy"><b> -&gt; </b></span>tgt.end<span style="color: navy">;</span>
    s.replacementSequence<span style="color: navy"><b> -&gt; </b></span>tgt.observedAllele<span style="color: navy">;</span>
    s.replacedSequence<span style="color: navy"><b> -&gt; </b></span>tgt.referenceAllele<span style="color: navy">;</span>
  <span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}

</span></pre></div>
  </text>
  <contained>
    <ConceptMap>
      <id value="orientationType"/>
      <status value="active"/>
      <group>
        <source value="http://hl7.org/fhir/orientation-type"/>
        <target value="http://hl7.org/fhir/4.0/orientation-type"/>
        <element>
          <code value="sense"/>
          <target>
            <code value="sense"/>
            <relationship value="related-to"/>
          </target>
        </element>
        <element>
          <code value="antisense"/>
          <target>
            <code value="antisense"/>
            <relationship value="related-to"/>
          </target>
        </element>
      </group>
    </ConceptMap>
  </contained>
  <contained>
    <ConceptMap>
      <id value="sequenceType"/>
      <status value="active"/>
      <group>
        <source value="http://hl7.org/fhir/sequence-type"/>
        <target value="http://hl7.org/fhir/4.0/sequence-type"/>
        <element>
          <code value="aa"/>
          <target>
            <code value="aa"/>
            <relationship value="related-to"/>
          </target>
        </element>
        <element>
          <code value="dna"/>
          <target>
            <code value="dna"/>
            <relationship value="related-to"/>
          </target>
        </element>
        <element>
          <code value="rna"/>
          <target>
            <code value="rna"/>
            <relationship value="related-to"/>
          </target>
        </element>
      </group>
    </ConceptMap>
  </contained>
  <contained>
    <ConceptMap>
      <id value="strandType"/>
      <status value="active"/>
      <group>
        <source value="http://hl7.org/fhir/strand-type"/>
        <target value="http://hl7.org/fhir/4.0/strand-type"/>
        <element>
          <code value="watson"/>
          <target>
            <code value="watson"/>
            <relationship value="related-to"/>
          </target>
        </element>
        <element>
          <code value="crick"/>
          <target>
            <code value="crick"/>
            <relationship value="related-to"/>
          </target>
        </element>
      </group>
    </ConceptMap>
  </contained>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="fhir"/>
  </extension>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
    <valueInteger value="1">
      <extension
                 url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
        <valueCanonical
                        value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"/>
      </extension>
    </valueInteger>
  </extension>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
    <valueCode value="trial-use">
      <extension
                 url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
        <valueCanonical
                        value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"/>
      </extension>
    </valueCode>
  </extension>
  <url value="http://hl7.org/fhir/StructureMap/MolecularSequence5to4"/>
  <version value="5.1.0"/>
  <name value="MolecularSequence5to4"/>
  <title value="FML Conversion for MolecularSequence: R5 to R4"/>
  <status value="active"/>
  <date value="2024-04-27T18:40:24+10:00"/>
  <publisher value="HL7 International / FHIR Infrastructure"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/fiwg"/>
    </telecom>
  </contact>
  <description value="FMLConversionforMolecularSequenceR5toR4"/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
    </coding>
  </jurisdiction>
  <structure>
    <url value="http://hl7.org/fhir/StructureDefinition/MolecularSequence"/>
    <mode value="source"/>
    <alias value="MolecularSequenceR5"/>
  </structure>
  <structure>
    <url
         value="http://hl7.org/fhir/4.0/StructureDefinition/MolecularSequence"/>
    <mode value="target"/>
    <alias value="MolecularSequenceR4"/>
  </structure>
  <import value="http://hl7.org/fhir/StructureMap/*5to4"/>
  <group>
    <name value="MolecularSequence"/>
    <extends value="DomainResource"/>
    <typeMode value="type-and-types"/>
    <input>
      <name value="src"/>
      <type value="MolecularSequenceR5"/>
      <mode value="source"/>
    </input>
    <input>
      <name value="tgt"/>
      <type value="MolecularSequenceR4"/>
      <mode value="target"/>
    </input>
    <rule>
      <name value="identifier"/>
      <source>
        <context value="src"/>
        <element value="identifier"/>
        <variable value="vvv"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="identifier"/>
        <variable value="vvv"/>
        <transform value="create"/>
      </target>
      <dependent>
        <name value="DefaultMappingGroupAnonymousAlias"/>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
      </dependent>
    </rule>
    <rule>
      <name value="type"/>
      <source>
        <context value="src"/>
        <element value="type"/>
        <variable value="v"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="type"/>
        <transform value="translate"/>
        <parameter>
          <valueId value="v"/>
        </parameter>
        <parameter>
          <valueString value="#sequenceType"/>
        </parameter>
        <parameter>
          <valueString value="code"/>
        </parameter>
      </target>
    </rule>
    <rule>
      <name value="subject"/>
      <source>
        <context value="src"/>
        <element value="subject"/>
        <variable value="vvv"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="patient"/>
        <variable value="vvv"/>
        <transform value="create"/>
      </target>
      <dependent>
        <name value="DefaultMappingGroupAnonymousAlias"/>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
      </dependent>
    </rule>
    <rule>
      <name value="specimen"/>
      <source>
        <context value="src"/>
        <element value="specimen"/>
        <variable value="vvv"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="specimen"/>
        <variable value="vvv"/>
        <transform value="create"/>
      </target>
      <dependent>
        <name value="DefaultMappingGroupAnonymousAlias"/>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
      </dependent>
      <documentation value="src.focus -&gt; tgt.focus;"/>
    </rule>
    <rule>
      <name value="device"/>
      <source>
        <context value="src"/>
        <element value="device"/>
        <variable value="vvv"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="device"/>
        <variable value="vvv"/>
        <transform value="create"/>
      </target>
      <dependent>
        <name value="DefaultMappingGroupAnonymousAlias"/>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
      </dependent>
    </rule>
    <rule>
      <name value="performer"/>
      <source>
        <context value="src"/>
        <element value="performer"/>
        <variable value="vvv"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="performer"/>
        <variable value="vvv"/>
        <transform value="create"/>
      </target>
      <dependent>
        <name value="DefaultMappingGroupAnonymousAlias"/>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
        <parameter>
          <valueId value="vvv"/>
        </parameter>
      </dependent>
    </rule>
    <rule>
      <name value="relative"/>
      <source>
        <context value="src"/>
        <element value="relative"/>
        <variable value="s"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="referenceSeq"/>
        <variable value="t"/>
      </target>
      <dependent>
        <name value="MolecularSequenceReferenceSeq"/>
        <parameter>
          <valueId value="s"/>
        </parameter>
        <parameter>
          <valueId value="t"/>
        </parameter>
      </dependent>
      <documentation value="src.literal -&gt; tgt.literal;"/>
    </rule>
    <rule>
      <name value="relative"/>
      <source>
        <context value="src"/>
        <element value="relative"/>
        <variable value="s"/>
      </source>
      <target>
        <context value="tgt"/>
        <element value="variant"/>
        <variable value="t"/>
      </target>
      <dependent>
        <name value="MolecularSequenceVariant"/>
        <parameter>
          <valueId value="s"/>
        </parameter>
        <parameter>
          <valueId value="t"/>
        </parameter>
      </dependent>
    </rule>
  </group>
  <group>
    <name value="MolecularSequenceReferenceSeq"/>
    <extends value="BackboneElement"/>
    <input>
      <name value="src"/>
      <mode value="source"/>
    </input>
    <input>
      <name value="tgt"/>
      <mode value="target"/>
    </input>
    <rule>
      <name value="startingSequence"/>
      <source>
        <context value="src"/>
        <element value="startingSequence"/>
        <variable value="s"/>
      </source>
      <target>
        <transform value="copy"/>
        <parameter>
          <valueId value="tgt"/>
        </parameter>
      </target>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21254-0'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="1"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 1"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21255-7'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="2"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 2"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21256-5'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="3"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 3"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21257-3'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="4"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 4"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21258-1'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="5"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 5"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21259-9'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="6"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 6"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21260-7'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="7"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 7"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21261-5'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="8"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 8"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21262-3'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="9"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 9"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21263-1'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="10"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 10"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21264-9'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="11"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 11"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21265-6'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="12"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 12"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21266-4'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="13"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 13"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21267-2'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="14"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 14"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21268-0'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="15"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 15"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21269-8'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="16"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 16"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21270-6'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="17"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 17"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21271-4'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="18"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 18"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21272-2'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="19"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 19"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21273-0'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="20"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 20"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21274-8'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="21"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 21"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21275-5'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="22"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome 22"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21276-3'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="X"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome X"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="chromosome"/>
        <source>
          <context value="s"/>
          <element value="chromosome"/>
          <variable value="s"/>
          <condition value="code = 'LA21277-1'"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="chromosome"/>
          <variable value="tc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="CodeableConcept"/>
          </parameter>
        </target>
        <target>
          <context value="tc"/>
          <element value="coding"/>
          <variable value="tcc"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Coding"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="system"/>
          <transform value="copy"/>
          <parameter>
            <valueString
                         value="http://terminology.hl7.org/CodeSystem/chromosome-human"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="code"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="Y"/>
          </parameter>
        </target>
        <target>
          <context value="tcc"/>
          <element value="display"/>
          <transform value="copy"/>
          <parameter>
            <valueString value="chromosome Y"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="sequenceCodeableConcept"/>
        <source>
          <context value="s"/>
          <type value="CodeableConcept"/>
          <element value="sequence"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="referenceSeqId"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="sequenceReference"/>
        <source>
          <context value="s"/>
          <type value="Reference"/>
          <element value="sequence"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="referenceSeqPointer"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="sequenceString"/>
        <source>
          <context value="s"/>
          <type value="string"/>
          <element value="sequence"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="referenceSeqString"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="windowStart"/>
        <source>
          <context value="s"/>
          <element value="windowStart"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="windowStart"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="windowEnd"/>
        <source>
          <context value="s"/>
          <element value="windowEnd"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="windowEnd"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="orientation"/>
        <source>
          <context value="s"/>
          <element value="orientation"/>
          <variable value="v"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="orientation"/>
          <transform value="translate"/>
          <parameter>
            <valueId value="v"/>
          </parameter>
          <parameter>
            <valueString value="#orientationType"/>
          </parameter>
          <parameter>
            <valueString value="code"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="strand"/>
        <source>
          <context value="s"/>
          <element value="strand"/>
          <variable value="v"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="strand"/>
          <transform value="translate"/>
          <parameter>
            <valueId value="v"/>
          </parameter>
          <parameter>
            <valueString value="#strandType"/>
          </parameter>
          <parameter>
            <valueString value="code"/>
          </parameter>
        </target>
      </rule>
    </rule>
  </group>
  <group>
    <name value="MolecularSequenceVariant"/>
    <extends value="BackboneElement"/>
    <input>
      <name value="src"/>
      <mode value="source"/>
    </input>
    <input>
      <name value="tgt"/>
      <mode value="target"/>
    </input>
    <rule>
      <name value="edit"/>
      <source>
        <context value="src"/>
        <element value="edit"/>
        <variable value="s"/>
      </source>
      <target>
        <transform value="copy"/>
        <parameter>
          <valueId value="tgt"/>
        </parameter>
      </target>
      <rule>
        <name value="start"/>
        <source>
          <context value="s"/>
          <element value="start"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="start"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="end"/>
        <source>
          <context value="s"/>
          <element value="end"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="end"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="replacementSequence"/>
        <source>
          <context value="s"/>
          <element value="replacementSequence"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="observedAllele"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
      <rule>
        <name value="replacedSequence"/>
        <source>
          <context value="s"/>
          <element value="replacedSequence"/>
          <variable value="vvv"/>
        </source>
        <target>
          <context value="tgt"/>
          <element value="referenceAllele"/>
          <variable value="vvv"/>
          <transform value="create"/>
        </target>
        <dependent>
          <name value="DefaultMappingGroupAnonymousAlias"/>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
          <parameter>
            <valueId value="vvv"/>
          </parameter>
        </dependent>
      </rule>
    </rule>
  </group>
</StructureMap>