Simple Sequence example 1

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/MolecularDefinition/example-sequence1> a fhir:MolecularDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-sequence1"] ; # 
  fhir:moleculeType [
     fhir:coding ( [
       fhir:system [ fhir:v "http://hl7.org/fhir/sequence-type"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "dna" ] ;
       fhir:display [ fhir:v "DNA Sequence" ]
     ] )
  ] ; # 
  fhir:representation ( [
     fhir:literal [
       fhir:value [ fhir:v "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ]
     ] ;
     fhir:resolvable [
       fhir:link <http://hl7.org/fhir/DocumentReference/example-genomicFile-mw7162561> ;
       fhir:reference [ fhir:v "DocumentReference/example-genomicFile-mw7162561" ]
     ] ;
     fhir:extracted [
       fhir:startingMolecule [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-starting-sequence-2b-extracted> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-extracted" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource:                 ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC                 TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA                 GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG                 AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG                 CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT                 GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG                 ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA                 AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG                 TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC                 AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA                 GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT                 AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ]
       ] ;
       fhir:coordinateInterval [
         fhir:coordinateSystem [
           fhir:system [
             fhir:coding ( [
               a loinc:LA30100-4 ;
               fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
               fhir:code [ fhir:v "LA30100-4" ] ;
               fhir:display [ fhir:v "0-based interval counting" ]
             ] ) ;
             fhir:text [ fhir:v "0-based interval counting" ]
           ]
         ]
       ] ;
       fhir:reverseComplement [ fhir:v false ]
     ] ;
     fhir:concatenated [
       fhir:sequenceElement ( [
         fhir:sequence [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence0-2b-concatenated> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence0-2b-concatenated" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Sequence-of index 0-Resource for concatenated sequence example:                     ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG" ]
         ] ;
         fhir:ordinalIndex [ fhir:v 0 ]
       ] [
         fhir:sequence [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence1-2b-concatenated> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence1-2b-concatenated" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Sequence-of index 1-Resource for concatenated sequence example:                     AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG" ]
         ] ;
         fhir:ordinalIndex [ fhir:v 1 ]
       ] [
         fhir:sequence [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence2-2b-concatenated> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-sequence2-2b-concatenated" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Sequence-of index 2-Resource for concatenated sequence example:                     TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ]
         ] ;
         fhir:ordinalIndex [ fhir:v 2 ]
       ] )
     ] ;
     fhir:relative [
       fhir:startingMolecule [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-starting-sequence-2b-relative> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-relative" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource" ]
       ] ;
       fhir:edit ( [
         fhir:coordinateInterval [
           fhir:coordinateSystem [
             fhir:system [
               fhir:coding ( [
                 a loinc:LA30100-4 ;
                 fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
                 fhir:code [ fhir:v "LA30100-4" ] ;
                 fhir:display [ fhir:v "0-based interval counting" ]
               ] ) ;
               fhir:text [ fhir:v "0-based interval counting" ]
             ]
           ]
         ] ;
         fhir:replacementMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-replacement-sequence> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-replacement-sequence" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replacement Sequence Resource: ATGAA" ]
         ] ;
         fhir:replacedMolecule [
           fhir:link <http://hl7.org/fhir/MolecularDefinition/example-replaced-sequence> ;
           fhir:reference [ fhir:v "MolecularDefinition/example-replaced-sequence" ] ;
           fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
           fhir:display [ fhir:v "Replaced Sequence Resource: CCCCC" ]
         ]
       ] )
     ]
  ] ) . # 

<http://hl7.org/fhir/DocumentReference/example-genomicFile-mw7162561> a fhir:DocumentReference .

<http://hl7.org/fhir/MolecularDefinition/example-starting-sequence-2b-extracted> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence0-2b-concatenated> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence1-2b-concatenated> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-sequence2-2b-concatenated> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-starting-sequence-2b-relative> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-replacement-sequence> a fhir:MolecularDefinition .

<http://hl7.org/fhir/MolecularDefinition/example-replaced-sequence> a fhir:MolecularDefinition .

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