Publish-box (todo)
Example Provenance/example-cwl (XML)
Raw XML (canonical form + also see XML Format Specification)
Jump past Narrative
MolecularSequence for CWL workflow project (id = "example-cwl")
<?xml version="1.0" encoding="UTF-8"?>
<Provenance xmlns="http://hl7.org/fhir">
<id value="example-cwl"/>
<text>
<status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml">
<p>
<b> Generated Narrative with Details</b>
</p> <p>
<b> id</b> : cwl-example</p> <p>
<b> target</b> : <a href="sequence-example-pgx-1.html">MolecularSequence/example-pgx-1</a>
</p> <p>
<b> period</b> : Nov 30, 2016 --> (ongoing)</p> <p>
<b> recorded</b> : Dec 1, 2016 8:12:14 AM</p> <p>
<b> reason</b> : profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:
[not stated] code null = 'null', stated as 'profiling Short Tandem Repeats
(STRs) from
high throughput sequencing data.')</p>
<h3> Agents</h3>
<table>
<tr>
<td> -</td>
<td>
<b> Role</b>
</td>
<td>
<b> Who</b>
</td>
</tr>
<tr>
<td> *</td>
<td> Author (Details: http://hl7.org/fhir/provenance-participant-role code author =
'Author',
stated as 'null')</td>
<td>
<a href="patient-example.html">Patient/example</a>
</td>
</tr>
</table>
<h3> Entities</h3>
<table>
<tr>
<td> -</td>
<td>
<b> Role</b>
</td>
<td>
<b> Reference</b>
</td>
</tr>
<tr>
<td> *</td>
<td> source</td>
<td>
<a href="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-wor
kflow.cwl">CWL example</a>
</td>
</tr>
</table>
</div>
</text>
<target>
<reference value="MolecularSequence/example-pgx-1/_history/1"/>
</target>
<occurredPeriod>
<start value="2016-11-30"/>
</occurredPeriod>
<recorded value="2016-12-01T08:12:14+10:00"/>
<activity>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v3-DataOperation"/>
<code value="CREATE"/>
<display value="create"/>
</coding>
<text value="profiling Short Tandem Repeats (STRs) from high throughput sequencing data."/>
</activity>
<agent>
<type>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v3-ParticipationType"/>
<code value="AUT"/>
</coding>
</type>
<who>
<reference value="Patient/example"/>
</who>
</agent>
<entity>
<role value="source"/>
<what>
<identifier>
<type>
<coding>
<system value="https://github.com/common-workflow-language/workflows"/>
<code value="CWL"/>
<display value="lobSTR"/>
</coding>
</type>
<value value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-wor
kflow.cwl"/>
</identifier>
</what>
</entity>
</Provenance>
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.