Publish-box (todo)
Example Provenance/example-biocompute-object (Turtle)
Raw Turtle (+ also see Turtle/RDF Format Specification)
MolecularSequence recorded by a Biocompute objects
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:Provenance ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "example-biocompute-object"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n <b>Generated Narrative with Details</b>\n </p><p>\n <b>id</b>: example-biocompute-object</p><p>\n <b>target</b>: <a href=\"sequence-example.html\">MolecularSequence/example</a>\n </p><p>\n <b>period</b>: 2017-6-6 --> (ongoing)</p><p>\n <b>recorded</b>: 2016-6-9 8:12:14</p><p>\n <b>reason</b>: antiviral resistance detection (Details: [not stated] code null = 'null', stated as\n 'antiviral resistance detection')</p>\n <h3>Agents</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Who</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n <td>\n <a href=\"practitioner-example.html\">Practitioner/example</a>\n </td>\n </tr>\n </table>\n <h3>Entities</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Reference</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>source</td>\n <td>\n <a href=\"https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1\">Biocompute example</a>\n </td>\n </tr>\n </table>\n </div>"
] ; #
fhir:target ( [
fhir:reference [ fhir:v "MolecularSequence/example/_history/1" ]
] ) ; #
fhir:occurred [
a fhir:Period ;
fhir:start [ fhir:v "2017-06-06"^^xsd:date ]
] ; #
fhir:recorded [ fhir:v "2016-06-09T08:12:14+10:00"^^xsd:dateTime] ; #
fhir:activity [
fhir:coding ( [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-DataOperation"^^xsd:anyURI ] ;
fhir:code [ fhir:v "CREATE" ] ;
fhir:display [ fhir:v "create" ]
] ) ;
fhir:text [ fhir:v "antiviral resistance detection" ]
] ; #
fhir:agent ( [
fhir:type [
fhir:coding ( [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-ParticipationType"^^xsd:anyURI ] ;
fhir:code [ fhir:v "AUT" ]
] )
] ;
fhir:who [
fhir:reference [ fhir:v "Practitioner/example" ]
]
] ) ; #
fhir:entity ( [
fhir:role [ fhir:v "source" ] ;
fhir:what [
fhir:identifier [
fhir:type [
fhir:coding ( [
fhir:system [ fhir:v "https://hive.biochemistry.gwu.edu"^^xsd:anyURI ] ;
fhir:code [ fhir:v "biocompute" ] ;
fhir:display [ fhir:v "obj.1001" ]
] )
] ; # <reference value=\"https:\/\/hive.biochemistry.gwu.edu\/cgi-bin\/prd\/htscsrs\/servlet.cgi?pageid=bcoexample_1\"\/> todo: this is not legal; fix once definition is fixed
fhir:value [ fhir:v "https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1" ]
]
]
] )] . #
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.