Example Provenance/example-biocompute-object (Turtle)
Raw Turtle (+ also see Turtle/RDF Format Specification)
MolecularSequence recorded by a Biocompute objects
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:Provenance;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "example-biocompute-object"]; #
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n <b>Generated Narrative with Details</b>\n </p><p>\n <b>id</b>: example-biocompute-object</p><p>\n <b>target</b>: <a href=\"sequence-example.html\">MolecularSequence/example</a>\n </p><p>\n <b>period</b>: 2017-6-6 --> (ongoing)</p><p>\n <b>recorded</b>: 2016-6-9 8:12:14</p><p>\n <b>reason</b>: antiviral resistance detection (Details: [not stated] code null = 'null', stated as\n 'antiviral resistance detection')</p>\n <h3>Agents</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Who</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n <td>\n <a href=\"practitioner-example.html\">Practitioner/example</a>\n </td>\n </tr>\n </table>\n <h3>Entities</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Reference</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>source</td>\n <td>\n <a href=\"https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1\">Biocompute example</a>\n </td>\n </tr>\n </table>\n </div>"
]; #
fhir:Provenance.target [
fhir:index 0;
fhir:Reference.reference [ fhir:value "MolecularSequence/example/_history/1" ]
]; #
fhir:Provenance.occurredPeriod [
fhir:Period.start [ fhir:value "2017-06-06"^^xsd:date ]
]; #
fhir:Provenance.recorded [ fhir:value "2016-06-09T08:12:14+10:00"^^xsd:dateTime]; #
fhir:Provenance.activity [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-DataOperation" ];
fhir:Coding.code [ fhir:value "CREATE" ];
fhir:Coding.display [ fhir:value "create" ]
];
fhir:CodeableConcept.text [ fhir:value "antiviral resistance detection" ]
]; #
fhir:Provenance.agent [
fhir:index 0;
fhir:Provenance.agent.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];
fhir:Coding.code [ fhir:value "AUT" ]
]
];
fhir:Provenance.agent.who [
fhir:Reference.reference [ fhir:value "Practitioner/example" ]
]
]; #
fhir:Provenance.entity [
fhir:index 0;
fhir:Provenance.entity.role [ fhir:value "source" ];
fhir:Provenance.entity.what [
fhir:Reference.identifier [
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "https://hive.biochemistry.gwu.edu" ];
fhir:Coding.code [ fhir:value "biocompute" ];
fhir:Coding.display [ fhir:value "obj.1001" ]
]
]; # <reference value=\"https:\/\/hive.biochemistry.gwu.edu\/cgi-bin\/prd\/htscsrs\/servlet.cgi?pageid=bcoexample_1\"\/> todo: this is not legal; fix once definition is fixed
fhir:Identifier.value [ fhir:value "https://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs/servlet.cgi?pageid=bcoexample_1" ]
]
]
]] . #
# - ontology header ------------------------------------------------------------
[a owl:Ontology;
owl:imports fhir:fhir.ttl] .
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.