Snapshot 3: Connectathon 32 Base

This is Snapshot #3 for FHIR R5, released to support Connectathon 32. For a full list of available versions, see the Directory of published versions.

Example List/example-double-cousin-relationship (Turtle)

FHIR Infrastructure Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Patient, Practitioner

Raw Turtle (+ also see Turtle/RDF Format Specification)

Simple genetic pedigree tree example with double cousin replationship

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:List;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "example-double-cousin-relationship"]; # 
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><table class=\"clstu\"><tr><td>Mode: snapshotStatus: currentCode: TPMT gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal</td></tr><tr><td>Subject: <a href=\"patient-example.html\">Patient/example: Pam Taylor</a> &quot;Peter CHALMERS&quot;</td></tr></table><table class=\"grid\"><tr style=\"backgound-color: #eeeeee\"><td><b>Items</b></td></tr><tr><td>?ngen-16a?</td></tr><tr><td>?ngen-16a?</td></tr><tr><td>?ngen-16a?</td></tr><tr><td>?ngen-16a?</td></tr><tr><td>?ngen-16a?</td></tr><tr><td>?ngen-16a?</td></tr></table></div>"
  ]; # 
  fhir:DomainResource.contained [
     a fhir:FamilyMemberHistory;
     fhir:index 0;
     fhir:Resource.id [ fhir:value "1" ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Mary" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "NMTH" ];
         fhir:Coding.display [ fhir:value "natural mother" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "natural mother" ]
     ];
     fhir:FamilyMemberHistory.deceasedBoolean [ fhir:value "true"^^xsd:boolean ];
     fhir:FamilyMemberHistory.condition [
       fhir:index 0;
       fhir:FamilyMemberHistory.condition.code [
         fhir:CodeableConcept.coding [
           fhir:index 0;
           a sct:73211009;
           fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
           fhir:Coding.code [ fhir:value "73211009" ];
           fhir:Coding.display [ fhir:value "Diabetes mellitus" ]
         ];
         fhir:CodeableConcept.text [ fhir:value "Diabetes mellitus" ]
       ];
       fhir:FamilyMemberHistory.condition.onsetAge [
         fhir:Quantity.value [ fhir:value "45"^^xsd:decimal ];
         fhir:Quantity.unit [ fhir:value "yr" ];
         fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
         fhir:Quantity.code [ fhir:value "a" ]
       ]
     ]
  ], [
     a fhir:FamilyMemberHistory;
     fhir:index 1;
     fhir:Resource.id [ fhir:value "2" ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Bob" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "PUNCLE" ];
         fhir:Coding.display [ fhir:value "paternal uncle" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "paternal uncle" ]
     ];
     fhir:FamilyMemberHistory.condition [
       fhir:index 0;
       fhir:FamilyMemberHistory.condition.code [
         fhir:CodeableConcept.coding [
           fhir:index 0;
           a sct:1481000119100;
           fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
           fhir:Coding.code [ fhir:value "1481000119100" ];
           fhir:Coding.display [ fhir:value "Diabetes mellitus type 2 without retinopathy" ]
         ];
         fhir:CodeableConcept.text [ fhir:value "Diabetes mellitus type 2 without retinopathy" ]
       ];
       fhir:FamilyMemberHistory.condition.onsetAge [
         fhir:Quantity.value [ fhir:value "35"^^xsd:decimal ];
         fhir:Quantity.unit [ fhir:value "yr" ];
         fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
         fhir:Quantity.code [ fhir:value "a" ]
       ]
     ]
  ], [
     a fhir:FamilyMemberHistory;
     fhir:index 2;
     fhir:Resource.id [ fhir:value "3" ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Jon" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "MUNCLE" ];
         fhir:Coding.display [ fhir:value "maternal uncle" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "maternal uncle" ]
     ]
  ], [
     a fhir:FamilyMemberHistory;
     fhir:index 3;
     fhir:Resource.id [ fhir:value "4" ];
     fhir:DomainResource.extension [
       fhir:index 0;
       fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-sibling" ];
       fhir:Element.extension [
         fhir:index 0;
         fhir:Extension.url [ fhir:value "type" ];
         fhir:Extension.valueCodeableConcept [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
             fhir:Coding.code [ fhir:value "NSIS" ];
             fhir:Coding.display [ fhir:value "natural sister" ]
           ];
           fhir:CodeableConcept.text [ fhir:value "natural sister" ]
         ]
       ], [
         fhir:index 1;
         fhir:Extension.url [ fhir:value "reference" ];
         fhir:Extension.valueReference [
           fhir:Reference.reference [ fhir:value "FamilyMemberHistory/mother" ]; #   It is fake.  
           fhir:Reference.display [ fhir:value "paternal grandmother" ]
         ]
       ]
     ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Alica" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "MGRMTH" ];
         fhir:Coding.display [ fhir:value "maternal grandmother" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "maternal grandmother" ]
     ]; #   This is a new relationship that here is a maternal grandmother who is paternal grandmonther's sibling   
     fhir:FamilyMemberHistory.ageAge [
       fhir:Quantity.value [ fhir:value "70"^^xsd:decimal ];
       fhir:Quantity.unit [ fhir:value "yr" ];
       fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
       fhir:Quantity.code [ fhir:value "a" ]
     ]
  ], [
     a fhir:FamilyMemberHistory;
     fhir:index 4;
     fhir:Resource.id [ fhir:value "5" ];
     fhir:DomainResource.extension [
       fhir:index 0;
       fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent" ];
       fhir:Element.extension [
         fhir:index 0;
         fhir:Extension.url [ fhir:value "type" ];
         fhir:Extension.valueCodeableConcept [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
             fhir:Coding.code [ fhir:value "MTH" ];
             fhir:Coding.display [ fhir:value "mother" ]
           ];
           fhir:CodeableConcept.text [ fhir:value "mother" ]
         ]
       ], [
         fhir:index 1;
         fhir:Extension.url [ fhir:value "reference" ];
         fhir:Extension.valueReference [
           fhir:Reference.reference [ fhir:value "FamilyMemberHistory/147146" ];
           fhir:Reference.display [ fhir:value "maternal grandmother" ]
         ]
       ]
     ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Aunt with Parent ID" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "MAUNT" ];
         fhir:Coding.display [ fhir:value "maternal aunt" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "maternal aunt" ]
     ];
     fhir:FamilyMemberHistory.sex [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://hl7.org/fhir/administrative-gender" ];
         fhir:Coding.code [ fhir:value "female" ];
         fhir:Coding.display [ fhir:value "Female" ]
       ]
     ];
     fhir:FamilyMemberHistory.ageAge [
       fhir:Quantity.value [ fhir:value "55"^^xsd:decimal ];
       fhir:Quantity.unit [ fhir:value "yr" ];
       fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
       fhir:Quantity.code [ fhir:value "a" ]
     ]
  ], [
     a fhir:FamilyMemberHistory;
     fhir:index 5;
     fhir:Resource.id [ fhir:value "6" ];
     fhir:DomainResource.extension [
       fhir:index 0;
       fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-sibling" ];
       fhir:Element.extension [
         fhir:index 0;
         fhir:Extension.url [ fhir:value "type" ];
         fhir:Extension.valueCodeableConcept [
           fhir:CodeableConcept.coding [
             fhir:index 0;
             fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
             fhir:Coding.code [ fhir:value "NBRO" ];
             fhir:Coding.display [ fhir:value "natural brother" ]
           ];
           fhir:CodeableConcept.text [ fhir:value "natural brother" ]
         ]
       ], [
         fhir:index 1;
         fhir:Extension.url [ fhir:value "reference" ];
         fhir:Extension.valueReference [
           fhir:Reference.reference [ fhir:value "FamilyMemberHistory/father" ]; #   It is fake.  
           fhir:Reference.display [ fhir:value "maternal grandfather" ]
         ]
       ]
     ];
     fhir:FamilyMemberHistory.status [ fhir:value "completed" ];
     fhir:FamilyMemberHistory.patient [
       fhir:Reference.reference [ fhir:value "Patient/example" ];
       fhir:Reference.display [ fhir:value "Pam Taylor" ]
     ];
     fhir:FamilyMemberHistory.name [ fhir:value "Paul" ];
     fhir:FamilyMemberHistory.relationship [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-RoleCode" ];
         fhir:Coding.code [ fhir:value "PGRFTH" ];
         fhir:Coding.display [ fhir:value "Paternal grandfather" ]
       ];
       fhir:CodeableConcept.text [ fhir:value "Paternal grandfather" ]
     ]; #   This is a new relationship that here is a maternal grandmother who is paternal grandmonther's sibling   
     fhir:FamilyMemberHistory.ageAge [
       fhir:Quantity.value [ fhir:value "74"^^xsd:decimal ];
       fhir:Quantity.unit [ fhir:value "yr" ];
       fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
       fhir:Quantity.code [ fhir:value "b" ]
     ]
  ]; # 
  fhir:List.status [ fhir:value "current"]; # 
  fhir:List.mode [ fhir:value "snapshot"]; # 
  fhir:List.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:80738-8;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "80738-8" ];
       fhir:Coding.display [ fhir:value "TPMT gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "TPMT gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal" ]
  ]; # 
  fhir:List.subject [
     fhir:Reference.reference [ fhir:value "Patient/example" ];
     fhir:Reference.display [ fhir:value "Pam Taylor" ]
  ]; # 
  fhir:List.entry [
     fhir:index 0;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#1" ]
     ]
  ], [
     fhir:index 1;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#2" ]
     ]
  ], [
     fhir:index 2;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#3" ]
     ]
  ], [
     fhir:index 3;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#4" ]
     ]
  ], [
     fhir:index 4;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#5" ]
     ]
  ], [
     fhir:index 5;
     fhir:List.entry.item [
       fhir:Reference.reference [ fhir:value "#6" ]
     ]
  ]] . # 

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.