Snapshot 3: Connectathon 32 Base

This is Snapshot #3 for FHIR R5, released to support Connectathon 32. For a full list of available versions, see the Directory of published versions.

Example CodeSystem/sequence-type (JSON)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: Informative

Raw JSON (canonical form + also see JSON Format Specification)

Definition for Code SystemsequenceType

{
  "resourceType" : "CodeSystem",
  "id" : "sequence-type",
  "meta" : {
    "lastUpdated" : "2022-12-14T07:12:54.019+11:00",
    "profile" : ["http://hl7.org/fhir/StructureDefinition/shareablecodesystem"]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system <code>http://hl7.org/fhir/sequence-type</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">aa<a name=\"sequence-type-aa\"> </a></td><td>AA Sequence</td><td>Amino acid sequence.</td></tr><tr><td style=\"white-space:nowrap\">dna<a name=\"sequence-type-dna\"> </a></td><td>DNA Sequence</td><td>DNA Sequence.</td></tr><tr><td style=\"white-space:nowrap\">rna<a name=\"sequence-type-rna\"> </a></td><td>RNA Sequence</td><td>RNA Sequence.</td></tr></table></div>"
  },
  "extension" : [{
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode" : "cg"
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode" : "trial-use"
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger" : 1
  }],
  "url" : "http://hl7.org/fhir/sequence-type",
  "identifier" : [{
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.4.220"
  },
  {
    "use" : "old",
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.1.215"
  }],
  "version" : "5.0.0-snapshot3",
  "name" : "sequenceType",
  "title" : "sequenceType",
  "status" : "active",
  "experimental" : false,
  "date" : "2021-01-05T10:01:24+11:00",
  "publisher" : "HL7 (FHIR Project)",
  "contact" : [{
    "telecom" : [{
      "system" : "url",
      "value" : "http://hl7.org/fhir"
    },
    {
      "system" : "email",
      "value" : "fhir@lists.hl7.org"
    }]
  }],
  "description" : "Type if a sequence -- DNA, RNA, or amino acid sequence.",
  "jurisdiction" : [{
    "coding" : [{
      "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "code" : "001",
      "display" : "World"
    }]
  }],
  "caseSensitive" : true,
  "valueSet" : "http://hl7.org/fhir/ValueSet/sequence-type",
  "content" : "complete",
  "concept" : [{
    "code" : "aa",
    "display" : "AA Sequence",
    "definition" : "Amino acid sequence."
  },
  {
    "code" : "dna",
    "display" : "DNA Sequence",
    "definition" : "DNA Sequence."
  },
  {
    "code" : "rna",
    "display" : "RNA Sequence",
    "definition" : "RNA Sequence."
  }]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.