Snapshot 3: Connectathon 32 Base

This is Snapshot #3 for FHIR R5, released to support Connectathon 32. For a full list of available versions, see the Directory of published versions.

Example CodeSystem/secondary-finding (XML)

Orders and Observations Work GroupMaturity Level: N/AStandards Status: Informative

Raw XML (canonical form + also see XML Format Specification)

Definition for Code SystemGeneticObservationSecondaryFindings

<?xml version="1.0" encoding="UTF-8"?>

<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="secondary-finding"/> 
  <meta> 
    <lastUpdated value="2022-12-14T07:12:54.019+11:00"/> 
    <profile value="http://hl7.org/fhir/StructureDefinition/shareablecodesystem"/> 
  </meta> 
  <text> 
    <status value="generated"/> 
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p> This code system 
        <code> http://hl7.org/fhir/secondary-finding</code>  defines the following codes:
      </p> 
      <table class="codes">
        <tr> 
          <td style="white-space:nowrap">
            <b> Code</b> 
          </td> 
          <td> 
            <b> Display</b> 
          </td> 
          <td> 
            <b> Definition</b> 
          </td> 
        </tr> 
        <tr> 
          <td style="white-space:nowrap">acmg-version1
            <a name="secondary-finding-acmg-version1"> </a> 
          </td> 
          <td> ACMG Version 1</td> 
          <td> First release (2013): ACMG Recommendations for Reporting of Incidental Findings
             in Clinical Exome and Genome Sequencing.  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC372727
            4/</td> 
        </tr> 
        <tr> 
          <td style="white-space:nowrap">acmg-version2
            <a name="secondary-finding-acmg-version2"> </a> 
          </td> 
          <td> ACMG Version 2</td> 
          <td> Second release (2016): Recommendations for reporting of secondary findings in clinical
             exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of
             the American College of Medical Genetics and Genomics. https://www.ncbi.nlm.nih.gov/pubmed/27
            854360</td> 
        </tr> 
      </table> 
    </div> 
  </text> 
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="oo"/> 
  </extension> 
  <url value="http://hl7.org/fhir/secondary-finding"/> 
  <identifier> 
    <system value="urn:ietf:rfc:3986"/> 
    <value value="urn:oid:2.16.840.1.113883.4.642.4.1286"/> 
  </identifier> 
  <version value="5.0.0-snapshot3"/> 
  <name value="GeneticObservationSecondaryFindings"/> 
  <title value="Genetic Observation Secondary Findings"/> 
  <status value="active"/> 
  <experimental value="false"/> 
  <description value="Codes to denote a guideline or policy statement when a genetic test result is being
   shared as a secondary finding."/> 
  <jurisdiction> 
    <coding> 
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/> 
      <code value="001"/> 
      <display value="World"/> 
    </coding> 
  </jurisdiction> 
  <caseSensitive value="true"/> 
  <valueSet value="http://hl7.org/fhir/ValueSet/secondary-finding"/> 
  <content value="complete"/> 
  <concept> 
    <code value="acmg-version1"/> 
    <display value="ACMG Version 1"/> 
    <definition value="First release (2013): ACMG Recommendations for Reporting of Incidental Findings
     in Clinical Exome and Genome Sequencing.  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC372727
    4/"/> 
  </concept> 
  <concept> 
    <code value="acmg-version2"/> 
    <display value="ACMG Version 2"/> 
    <definition value="Second release (2016): Recommendations for reporting of secondary findings in clinical
     exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of
     the American College of Medical Genetics and Genomics. https://www.ncbi.nlm.nih.gov/pubmed/27
    854360"/> 
  </concept> 
</CodeSystem> 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.