Snapshot 3: Connectathon 32 Base

This is Snapshot #3 for FHIR R5, released to support Connectathon 32. For a full list of available versions, see the Directory of published versions.

Example CodeSystem/genomicstudy-changetype (Turtle)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: Informative

Raw Turtle (+ also see Turtle/RDF Format Specification)

Definition for Code SystemGenomicStudyChangeType

@prefix fhir: <http://hl7.org/fhir/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .

# - resource -------------------------------------------------------------------

[] a fhir:CodeSystem;
  fhir:Resource.id [ fhir:value "genomicstudy-changetype"];
  fhir:Resource.meta [
     fhir:Meta.lastUpdated [ fhir:value "2022-12-13T15:12:54.019-05:00" ];
     fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/StructureDefinition/shareablecodesystem" ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ]
  ];
  fhir:DomainResource.extension [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg" ];
     fhir:Extension.value [ fhir:value "cg" ]
  ], [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status" ];
     fhir:Extension.value [ fhir:value "trial-use" ]
  ], [
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm" ];
     fhir:Extension.value [ fhir:value "0" ]
  ];
  fhir:CanonicalResource.url [ fhir:value "http://hl7.org/fhir/genomicstudy-changetype"];
  fhir:CanonicalResource.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
     fhir:Identifier.value [ fhir:value "urn:oid:2.16.840.1.113883.4.642.4.1977" ]
  ];
  fhir:CanonicalResource.version [ fhir:value "5.0.0-snapshot3"];
  fhir:CanonicalResource.name [ fhir:value "GenomicStudyChangeType"];
  fhir:CanonicalResource.title [ fhir:value "GenomicStudyChangeType"];
  fhir:CanonicalResource.status [ fhir:value "active"];
  fhir:CanonicalResource.experimental [ fhir:value "true"];
  fhir:CanonicalResource.date [ fhir:value "2022-08-17T15:48:24-05:00"];
  fhir:CanonicalResource.publisher [ fhir:value "HL7 (FHIR Project)"];
  fhir:CanonicalResource.contact [
     fhir:ContactDetail.telecom [
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/fhir" ]
     ], [
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "fhir@lists.hl7.org" ]
     ]
  ];
  fhir:CanonicalResource.description [ fhir:value "The change type relevant to GenomicStudy analysis."];
  fhir:CanonicalResource.jurisdiction [
     fhir:CodeableConcept.coding [
       fhir:Coding.system [ fhir:value "http://unstats.un.org/unsd/methods/m49/m49.htm" ];
       fhir:Coding.code [ fhir:value "001" ];
       fhir:Coding.display [ fhir:value "World" ]
     ]
  ];
  fhir:CodeSystem.url [ fhir:value "http://hl7.org/fhir/genomicstudy-changetype"];
  fhir:CodeSystem.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ];
     fhir:Identifier.value [ fhir:value "urn:oid:2.16.840.1.113883.4.642.4.1977" ]
  ];
  fhir:CodeSystem.version [ fhir:value "5.0.0-snapshot3"];
  fhir:CodeSystem.name [ fhir:value "GenomicStudyChangeType"];
  fhir:CodeSystem.title [ fhir:value "GenomicStudyChangeType"];
  fhir:CodeSystem.status [ fhir:value "active"];
  fhir:CodeSystem.experimental [ fhir:value "true"];
  fhir:CodeSystem.date [ fhir:value "2022-08-17T15:48:24-05:00"];
  fhir:CodeSystem.publisher [ fhir:value "HL7 (FHIR Project)"];
  fhir:CodeSystem.contact [
     fhir:ContactDetail.telecom [
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/fhir" ]
     ], [
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "fhir@lists.hl7.org" ]
     ]
  ];
  fhir:CodeSystem.description [ fhir:value "The change type relevant to GenomicStudy analysis."];
  fhir:CodeSystem.jurisdiction [
     fhir:CodeableConcept.coding [
       fhir:Coding.system [ fhir:value "http://unstats.un.org/unsd/methods/m49/m49.htm" ];
       fhir:Coding.code [ fhir:value "001" ];
       fhir:Coding.display [ fhir:value "World" ]
     ]
  ];
  fhir:CodeSystem.caseSensitive [ fhir:value "true"];
  fhir:CodeSystem.valueSet [ fhir:value "http://hl7.org/fhir/ValueSet/genomicstudy-changetype"];
  fhir:CodeSystem.content [ fhir:value "complete"];
  fhir:CodeSystem.concept [
     fhir:ConceptDefinitionComponent.code [ fhir:value "DNA" ];
     fhir:ConceptDefinitionComponent.display [ fhir:value "DNA change" ];
     fhir:ConceptDefinitionComponent.definition [ fhir:value "Change that involves Deoxyribonucleic acid (DNA) sequences." ]
  ], [
     fhir:ConceptDefinitionComponent.code [ fhir:value "RNA" ];
     fhir:ConceptDefinitionComponent.display [ fhir:value "RNA change" ];
     fhir:ConceptDefinitionComponent.definition [ fhir:value "Change that involves Ribonucleic Acid (RNA) sequences." ]
  ], [
     fhir:ConceptDefinitionComponent.code [ fhir:value "AA" ];
     fhir:ConceptDefinitionComponent.display [ fhir:value "Protein/amino Acids change " ];
     fhir:ConceptDefinitionComponent.definition [ fhir:value "Change that involves Amino Acid (AA) or protein sequences." ]
  ], [
     fhir:ConceptDefinitionComponent.code [ fhir:value "CHR" ];
     fhir:ConceptDefinitionComponent.display [ fhir:value "Chromosomal changes" ];
     fhir:ConceptDefinitionComponent.definition [ fhir:value "Change that involves number or strcture of chromosomes." ]
  ], [
     fhir:ConceptDefinitionComponent.code [ fhir:value "CNV" ];
     fhir:ConceptDefinitionComponent.display [ fhir:value "Copy number variations" ];
     fhir:ConceptDefinitionComponent.definition [ fhir:value "Change that involves copy number variations among various genomes." ]
  ] .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.