Snapshot 3: Connectathon 32 Base

This is Snapshot #3 for FHIR R5, released to support Connectathon 32. For a full list of available versions, see the Directory of published versions.

Example GenomicStudy/genomicSpecimen (XML)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw XML (canonical form + also see XML Format Specification)

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Specimen - Genomic (id = "genomicSpecimen")

<?xml version="1.0" encoding="UTF-8"?>

<Specimen xmlns="http://hl7.org/fhir">
  <id value="genomicSpecimen"/> 
  <text> 
    <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border:
       1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource &quot;genomicSpecimen&quot; </p> </div> <p> <b> identifier</b> : id: 4</p> <p> <b> status</b> : available</p> <p> <b> type</b> : Specimen from lung obtained by biopsy (specimen)  <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #122610009)</span> </p> <p> <b> subject</b> : <a href="Patient-genomicPatient.html">Patient/genomicPatient: John Doe</a>  &quot; DOE&quot;</p> <p> <b> receivedTime</b> : 2019-03-01 01:01:01+0000</p> <p> <b> request</b> : <a href="ServiceRequest-genomicServiceRequest.html">ServiceRequest/genomicServiceRequest</a> </p> <h3> Collections</h3> <table class="grid"><tr> <td> -</td> <td> <b> Collector</b> </td> <td> <b> Collected[x]</b> </td> <td> <b> Quantity</b> </td> <td> <b> Method</b> </td> </tr> <tr> <td> *</td> <td> <a href="Practitioner-practitioner01.html">Practitioner/practitioner01</a>  &quot; DOEL&quot;</td> <td> 2019-03-01 01:01:00+0000</td> <td> 1 mm2</td> <td> Biopsy - action <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="https://browser.ihtsdotools.org/">SNOMED CT</a> #129314006)</span> </td> </tr> </table> </div> 
  </text> 
  <identifier> 
    <system value="http://www.somesystemabc.net/identifiers/specimens"/> 
    <value value="4"/> 
  </identifier> 
  <status value="available"/> 
  <type> 
    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="122610009"/> 
      <display value="Specimen from lung obtained by biopsy (specimen) "/> 
    </coding> 
  </type> 
  <subject> 
    <reference value="Patient/genomicPatient"/> 
    <display value="John Doe"/> 
  </subject> 
  <receivedTime value="2019-03-01T01:01:01Z"/> 
  <request> 
    <reference value="ServiceRequest/genomicServiceRequest"/> 
  </request> 
  <collection> 
    <collector> 
      <reference value="Practitioner/practitioner01"/> 
    </collector> 
    <collectedDateTime value="2019-03-01T01:01:00Z"/> 
    <quantity> 
      <value value="1"/> 
      <unit value="mm2"/> 
    </quantity> 
    <method> 
      <coding> 
        <system value="http://snomed.info/sct"/> 
        <code value="129314006"/> 
        <display value="Biopsy - action"/> 
      </coding> 
    </method> 
  </collection> 
</Specimen> 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.