This page is part of the FHIR Specification (v5.0.0-ballot: FHIR R5 Ballot Preview). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3 R2
Orders and Observations Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Device, Patient, Practitioner |
Raw JSON (canonical form + also see JSON Format Specification)
Bacterial Isolate from Stool sample
{ "resourceType": "Specimen", "id": "isolate", "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen</b><a name=\"isolate\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Specimen "isolate" </p></div><p><b>accessionIdentifier</b>: id: X352356-ISO1</p><p><b>status</b>: available</p><p><b>type</b>: Bacterial isolate specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#429951000124103)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> "Peter CHALMERS"</p><p><b>receivedTime</b>: 2015-08-18T07:03:00Z</p><p><b>parent</b>: <a name=\"stool\"> </a></p><blockquote><p/><p><a name=\"stool\"> </a></p><p><b>accessionIdentifier</b>: id: X352356</p><p><b>status</b>: unavailable</p><p><b>type</b>: Stool specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#119339001)</span></p><p><b>subject</b>: <a href=\"patient-example.html\">Patient/example</a> "Peter CHALMERS"</p><p><b>receivedTime</b>: 2015-08-16T07:03:00Z</p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><span>: Patient</span></td><td><span title=\" the time of collection is usually required. Usually a point in time, but can be a period \n (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) \">2011-08-16T06:15:00Z</span></td><td><span title=\" method is usually implied by type \">Line, Venous <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#LNV)</span></span></td></tr></table></blockquote><p><b>role</b>: Patient <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ([not stated]#p)</span></p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a href=\"practitioner-example-f202-lm.html\">Practitioner/f202</a> "Luigi Maas"</td><td><span title=\" the time of collection is usually required. Usually a point in time, but can be a period \n (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) \">2015-08-16T07:03:00Z</span></td><td><span title=\" method is usually implied by type \">Plates, Blood Agar <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v2-0488.html\">specimenCollectionMethod</a>#BAP)</span></span></td></tr></table><p><b>note</b>: Patient dropped off specimen</p></div>" }, "contained": [ { "resourceType": "Specimen", "id": "stool", "accessionIdentifier": { "system": "http://lab.acme.org/specimens/2015", "value": "X352356" }, "status": "unavailable", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "119339001", "display": "Stool specimen" } ] }, "subject": { "reference": "Patient/example" }, "receivedTime": "2015-08-16T07:03:00Z", "collection": { "collector": { "display": "Patient" }, "collectedDateTime": "2011-08-16T06:15:00Z", "method": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0488", "code": "LNV" } ] } } } ], "accessionIdentifier": { "system": "http://lab.acme.org/specimens/2011", "value": "X352356-ISO1" }, "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "429951000124103", "display": "Bacterial isolate specimen" } ] }, "subject": { "reference": "Patient/example" }, "receivedTime": "2015-08-18T07:03:00Z", "parent": [ { "reference": "#stool" } ], "role": [ { "coding": [ { "code": "p", "display": "Patient" } ] } ], "collection": { "collector": { "reference": "Practitioner/f202" }, "collectedDateTime": "2015-08-16T07:03:00Z", "method": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0488", "code": "BAP" } ] } }, "note": [ { "text": "Patient dropped off specimen" } ] }
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.