This page is part of the FHIR Specification (v5.0.0-ballot: FHIR R5 Ballot Preview). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions
Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Patient |
Raw JSON (canonical form + also see JSON Format Specification)
MolecularSequence example for long fusion RNA molecule of FGFR and MET
{ "resourceType": "MolecularSequence", "id": "seq-ordinal", "text": { "status": "generated", "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: MolecularSequence</b><a name=\"seq-ordinal\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource MolecularSequence "seq-ordinal" </p></div><p><b>type</b>: rna</p><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 1-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30102-0)</span></p><p><b>ordinalPosition</b>: 1</p><p><b>sequenceRange</b>: 1-2194</p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NM_000141.5 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (#NM_000141.5)</span></td><td>1</td><td>2194</td></tr></table></blockquote><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 1-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30102-0)</span></p><p><b>ordinalPosition</b>: 2</p><p><b>sequenceRange</b>: 2194-4899</p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NM_000245.4 <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (#NM_000245.4)</span></td><td>1923</td><td>6822</td></tr></table></blockquote></div>" }, "type": "rna", "relative": [ { "coordinateSystem": { "coding": [ { "system": "http://loinc.org", "code": "LA30102-0", "display": "1-based character counting" } ] }, "ordinalPosition": 1, "sequenceRange": { "low": { "value": 1 }, "high": { "value": 2194 } }, "startingSequence": { "sequenceCodeableConcept": { "coding": [ { "system": "http://www.ncbi.nlm.nih.gov/nuccore/", "code": "NM_000141.5" } ] }, "windowStart": 1, "windowEnd": 2194 } }, { "coordinateSystem": { "coding": [ { "system": "http://loinc.org", "code": "LA30102-0", "display": "1-based character counting" } ] }, "ordinalPosition": 2, "sequenceRange": { "low": { "value": 2194 }, "high": { "value": 4899 } }, "startingSequence": { "sequenceCodeableConcept": { "coding": [ { "system": "http://www.ncbi.nlm.nih.gov/nuccore/", "code": "NM_000245.4" } ] }, "windowStart": 1923, "windowEnd": 6822 } } ] }
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.