This page is part of the FHIR Specification (v5.0.0-ballot: FHIR R5 Ballot Preview). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3
Security Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Device, Patient, Practitioner, RelatedPerson |
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MolecularSequence for CWL workflow project
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- [a fhir:Provenance; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "example-cwl"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n <b>Generated Narrative with Details</b>\n </p><p>\n <b>id</b>: cwl-example</p><p>\n <b>target</b>: <a href=\"http://build.fhir.org/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n </p><p>\n <b>period</b>: Nov 30, 2016 --> (ongoing)</p><p>\n <b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n <b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n high throughput sequencing data.')</p>\n <h3>Agents</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Who</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n <td>\n <a href=\"http://build.fhir.org/patient-example.html\">Patient/example</a>\n </td>\n </tr>\n </table>\n <h3>Entities</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Reference</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>source</td>\n <td>\n <a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n </td>\n </tr>\n </table>\n </div>" ]; fhir:Provenance.target [ fhir:index 0; fhir:Reference.reference [ fhir:value "MolecularSequence/example-pgx-1/_history/1" ] ]; fhir:Provenance.occurredPeriod [ fhir:Period.start [ fhir:value "2016-11-30"^^xsd:date ] ]; fhir:Provenance.recorded [ fhir:value "2016-12-01T08:12:14+10:00"^^xsd:dateTime]; fhir:Provenance.activity [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-DataOperation" ]; fhir:Coding.code [ fhir:value "CREATE" ]; fhir:Coding.display [ fhir:value "create" ] ]; fhir:CodeableConcept.text [ fhir:value "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ] ]; fhir:Provenance.agent [ fhir:index 0; fhir:Provenance.agent.type [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ]; fhir:Coding.code [ fhir:value "AUT" ] ] ]; fhir:Provenance.agent.who [ fhir:Reference.reference [ fhir:value "Patient/example" ] ] ]; fhir:Provenance.entity [ fhir:index 0; fhir:Provenance.entity.role [ fhir:value "source" ]; fhir:Provenance.entity.what [ fhir:Reference.identifier [ fhir:Identifier.type [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://github.com/common-workflow-language/workflows" ]; fhir:Coding.code [ fhir:value "CWL" ]; fhir:Coding.display [ fhir:value "lobSTR" ] ] ]; fhir:Identifier.value [ fhir:value "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ] ] ] ]] . # - ontology header ------------------------------------------------------------ [a owl:Ontology; owl:imports fhir:fhir.ttl] . # -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.