Specimen - Genomic

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:Specimen;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "genomicSpecimen"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;genomicSpecimen&quot; </p></div><p><b>identifier</b>: id: 4</p><p><b>status</b>: available</p><p><b>type</b>: Specimen from lung obtained by biopsy (specimen)  <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#122610009)</span></p><p><b>subject</b>: <a href=\"Patient-genomicPatient.html\">Patient/genomicPatient: John Doe</a> &quot; DOE&quot;</p><p><b>receivedTime</b>: 2019-03-01 01:01:01+0000</p><p><b>request</b>: <a href=\"ServiceRequest-genomicServiceRequest.html\">ServiceRequest/genomicServiceRequest</a></p><h3>Collections</h3><table class=\"grid\"><tr><td>-</td><td><b>Collector</b></td><td><b>Collected[x]</b></td><td><b>Quantity</b></td><td><b>Method</b></td></tr><tr><td>*</td><td><a href=\"Practitioner-practitioner01.html\">Practitioner/practitioner01</a> &quot; DOEL&quot;</td><td>2019-03-01 01:01:00+0000</td><td>1 mm2</td><td>Biopsy - action <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#129314006)</span></td></tr></table></div>"
  ];
  fhir:Specimen.identifier [
     fhir:index 0;
     fhir:Identifier.system [ fhir:value "http://www.somesystemabc.net/identifiers/specimens" ];
     fhir:Identifier.value [ fhir:value "4" ]
  ];
  fhir:Specimen.status [ fhir:value "available"];
  fhir:Specimen.type [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:122610009;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "122610009" ];
       fhir:Coding.display [ fhir:value "Specimen from lung obtained by biopsy (specimen) " ]
     ]
  ];
  fhir:Specimen.subject [
     fhir:Reference.reference [ fhir:value "Patient/genomicPatient" ];
     fhir:Reference.display [ fhir:value "John Doe" ]
  ];
  fhir:Specimen.receivedTime [ fhir:value "2019-03-01T01:01:01Z"^^xsd:dateTime];
  fhir:Specimen.request [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "ServiceRequest/genomicServiceRequest" ]
  ];
  fhir:Specimen.collection [
     fhir:Specimen.collection.collector [
       fhir:Reference.reference [ fhir:value "Practitioner/practitioner01" ]
     ];
     fhir:Specimen.collection.collectedDateTime [ fhir:value "2019-03-01T01:01:00Z"^^xsd:dateTime ];
     fhir:Specimen.collection.quantity [
       fhir:Quantity.value [ fhir:value "1"^^xsd:decimal ];
       fhir:Quantity.unit [ fhir:value "mm2" ]
     ];
     fhir:Specimen.collection.method [
       fhir:CodeableConcept.coding [
         fhir:index 0;
         a sct:129314006;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
         fhir:Coding.code [ fhir:value "129314006" ];
         fhir:Coding.display [ fhir:value "Biopsy - action" ]
       ]
     ]
  ]] .

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------