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Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Patient |
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DocumentReference - Genomic VCF File
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- [a fhir:DocumentReference; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "genomicVCFfile"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource "genomicVCFfile" </p></div><p><b>identifier</b>: id: 11116</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>description</b>: A sample Document Reference instance representing a VCF file that may be used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p></blockquote></div>" ]; fhir:DocumentReference.identifier [ fhir:index 0; fhir:Identifier.system [ fhir:value "http://www.somesystemabc.net/identifiers/files" ]; fhir:Identifier.value [ fhir:value "11116" ] ]; fhir:DocumentReference.status [ fhir:value "current"]; fhir:DocumentReference.docStatus [ fhir:value "preliminary"]; fhir:DocumentReference.description [ fhir:value "A sample Document Reference instance representing a VCF file that may be used as input or output of a genomic analysis pipeline."]; fhir:DocumentReference.securityLabel [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-Confidentiality" ]; fhir:Coding.code [ fhir:value "R" ]; fhir:Coding.display [ fhir:value "Restricted" ] ] ]; fhir:DocumentReference.content [ fhir:index 0; fhir:DocumentReference.content.attachment [ fhir:Attachment.url [ fhir:value "http://www.somesystemabc.net/identifiers/files/11114" ]; fhir:Attachment.title [ fhir:value "Sample Genomic VCF File" ]; fhir:Attachment.creation [ fhir:value "2019-03-01T01:02:01+01:00"^^xsd:dateTime ] ] ]] . # - ontology header ------------------------------------------------------------ [a owl:Ontology; owl:imports fhir:fhir.ttl] . # -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.