Release 5 Ballot

This page is part of the FHIR Specification (v5.0.0-ballot: FHIR R5 Ballot Preview). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Example GenomicStudy/SimpleVariantAnalysis-called (JSON)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw JSON (canonical form + also see JSON Format Specification)

DocumentReference - Simple Variant Analysis - Called

{
  "resourceType": "DocumentReference",
  "id": "SimpleVariantAnalysis-called",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;SimpleVariantAnalysis_called&quot; </p></div><p><b>identifier</b>: id: 11118</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>description</b>: A sample Document Reference instance representing a BED file that may be used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p></blockquote></div>"
  },
  "identifier": [
    {
      "system": "http://www.somesystemabc.net/identifiers/files",
      "value": "11118"
    }
  ],
  "status": "current",
  "docStatus": "preliminary",
  "description": "SimpleVariantAnalysis_called: A sample Document Reference instance representing a BED file that may be used as input or output of a genomic analysis pipeline.",
  "securityLabel": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v3-Confidentiality",
          "code": "R",
          "display": "Restricted"
        }
      ]
    }
  ],
  "content": [
    {
      "attachment": {
        "url": "https://chat.fhir.org/user_uploads/10155/jQZWWKs4JO8ZfhfrbsCbbMUA/SimpleVariantAnalysis_called.bed",
        "title": "SimpleVariantAnalysis_called",
        "creation": "2019-03-01T01:02:01+01:00"
      }
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.