Observation-example-haplotype2.xml

Example of another haplotype data that is basis of a diplotype data (id = "example-haplotype2")

<?xml version="1.0" encoding="UTF-8"?>

<Observation xmlns="http://hl7.org/fhir">
<!--    NOTE: This example will soon be revised and moved to the Genomics Reporting implementation
   guide - current version at http://hl7.org/fhir/uv/genomics-reporting    -->
  <id value="example-haplotype2"/> 
  <text> <status value="extensions"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <div> <p> Resource &quot;example-haplotype2&quot; </p> </div> <p> <b> Gene</b> : CYP2C9 <span>  (<a> HUGO Gene Nomenclature</a> #2623)</span> </p> <p> <b> status</b> : unknown</p> <p> <b> code</b> : The material on this page will be removed in a future release. This content is deprecated
         and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting
         Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance.
         Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
         associated observations that can be reported with a molecular genetics analysis result.
         <span>  (<a> LOINC</a> #55233-1)</span> </p> <p> <b> subject</b> : <a> Patient/727127: J*********** C***********</a> </p> <p> <b> issued</b> : 4 Apr. 2013, 1:30:10 am</p> <p> <b> value</b> : *4 <span>  (pharmakb.org#PA16581679)</span> </p> <p> <b> specimen</b> : <a> Specimen/genetics-example1-somatic: Molecular Specimen ID: MLD45-Z4-1234</a> </p> <p> <b> derivedFrom</b> : </p> <ul> <li> <a> MolecularSequence/example-pgx-1</a> </li> <li> <a> MolecularSequence/example-pgx-2</a> </li> </ul> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://www.genenames.org"/> 
        <code value="2623"/> 
        <display value="CYP2C9"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> <!--   extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
        <valueReference>
            <reference value="MolecularSequence/example-sequence1"/>
        </valueReference>
    </extension>
    <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
        <valueReference>
            <reference value="MolecularSequence/example-sequence2"/>
        </valueReference>
    </extension   --><status value="unknown"/> 
  <code> 
    <coding> 
      <system value="http://loinc.org"/> 
      <code value="55233-1"/> 
      <display value="The material on this page will be removed in a future release. This content is deprecated
       and SHOULD NOT be used. Implementers are instead directed to the ([Genomics Reporting
       Implementation Guide](http://hl7.org/fhir/uv/genomics-reporting/index.html)) for guidance.
       Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/> 
    </coding> 
  </code> 
  <subject> 
    <reference value="Patient/727127"/> 
    <display value="J*********** C***********"/> 
  </subject> 
  <issued value="2013-04-03T15:30:10+01:00"/> 
  <valueCodeableConcept> 
    <coding> 
      <system value="http://pharmakb.org"/> 
      <code value="PA16581679"/> 
      <display value="*4"/> 
    </coding> 
  </valueCodeableConcept> 
  <specimen> 
    <reference value="Specimen/genetics-example1-somatic"/> 
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/> 
  </specimen> <!--   >If you do not like "related", you can delete this block<   --><derivedFrom> 
    <reference value="MolecularSequence/example-pgx-1"/> 
  </derivedFrom> 
  <derivedFrom> 
    <reference value="MolecularSequence/example-pgx-2"/> 
  </derivedFrom> 
</Observation>