This page is part of the FHIR Specification (v4.3.0-snapshot1: Release 4B Snapshot #1). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3

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Extension: PhaseSet

URL for this extension:

http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Phase set information.

Context of Use: Use on Element ID Observation

Extension Content

• Summary
• Full Structure
• XML
• JSON
• All

Summary

Name	Flags	Card.	Type	Description & Constraints
PhaseSet		0..*	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet PhaseSet: Phase set information. Use on Element ID Observation
Id		0..1	uri	This is a globally unique phaseSet id.
MolecularSequence		1..*	Reference(MolecularSequence)	The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the (Genomics Reporting Implementation Guide) for guidance. MolecularSequence pointed to phase set (from: https://www.hl7.org/fhir/STU3/extension-observation-geneticssequence.html).
Documentation for this format

Full Structure

Name	Flags	Card.	Type	Description & Constraints
extension		0..*	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet PhaseSet: Phase set information. Use on Element ID Observation
Slices for extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
extension:Id		0..1	Extension	Phase set ID
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..0
url		1..1	uri	"Id"
value[x]		1..1	uri	Value of extension
extension:MolecularSequence		1..*	Extension	Phase set sequence
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..0
url		1..1	uri	"MolecularSequence"
value[x]		1..1	Reference(MolecularSequence)	Value of extension
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet"
value[x]		0..0
valueBase64Binary			base64Binary
valueBoolean			boolean
valueCanonical			canonical(Any)
valueCode			code
valueDate			date
valueDateTime			dateTime
valueDecimal			decimal
valueId			id
valueInstant			instant
valueInteger			integer
valueMarkdown			markdown
valueOid			oid
valuePositiveInt			positiveInt
valueString			string
valueTime			time
valueUnsignedInt			unsignedInt
valueUri			uri
valueUrl			url
valueUuid			uuid
valueAddress			Address
valueAge			Age
valueAnnotation			Annotation
valueAttachment			Attachment
valueCodeableConcept			CodeableConcept
valueCodeableReference			CodeableReference
valueCoding			Coding
valueContactPoint			ContactPoint
valueCount			Count
valueDistance			Distance
valueDuration			Duration
valueHumanName			HumanName
valueIdentifier			Identifier
valueMoney			Money
valuePeriod			Period
valueQuantity			Quantity
valueRange			Range
valueRatio			Ratio
valueRatioRange			RatioRange
valueReference			Reference(Any)
valueSampledData			SampledData
valueSignature			Signature
valueTiming			Timing
valueContactDetail			ContactDetail
valueContributor			Contributor
valueDataRequirement			DataRequirement
valueExpression			Expression
valueParameterDefinition			ParameterDefinition
valueRelatedArtifact			RelatedArtifact
valueTriggerDefinition			TriggerDefinition
valueUsageContext			UsageContext
valueDosage			Dosage
valueMeta			Meta
Documentation for this format

XML Template

<!-- PhaseSet -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet" >
 <-- extension sliced by value:url  in the specified orderOpen-->
 <extension url="Id">  0..1 Extension  <!--  0..1 Phase set ID -->
  <valueUri value="[uri]"/><!--  1..1 Value of extension -->
 </extension>
 <extension url="MolecularSequence">  1..* Extension  <!--  1..* Phase set sequence -->
  <valueReference><!--  1..1 Reference(MolecularSequence) Value of extension --></valueReference>
 </extension>
</extension>

JSON Template

{ // PhaseSet
    "extension" : [ //  sliced by value:url  in the specified order, Open 
      { // Phase set ID // C?
        // from Element: extension
        "extension" : [ //  sliced by value:url  in the specified order, Open ]
        "url" : "Id", // R! 
        "valueUri" : "<uri>" // C? R! Value of extension
      },
      { // Phase set sequence // C? R! 
        // from Element: extension
        "extension" : [ //  sliced by value:url  in the specified order, Open ]
        "url" : "MolecularSequence", // R! 
        "valueReference" : { Reference(MolecularSequence) } // C? R! Value of extension
      }
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet", // R! 
// value[x]: Value of extension. One of these 52:
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
PhaseSet		0..*	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet PhaseSet: Phase set information. Use on Element ID Observation
Id		0..1	uri	This is a globally unique phaseSet id.
MolecularSequence		1..*	Reference(MolecularSequence)	The material on this page will be removed in a future release. This content is deprecated and SHOULD NOT be used. Implementers are instead directed to the (Genomics Reporting Implementation Guide) for guidance. MolecularSequence pointed to phase set (from: https://www.hl7.org/fhir/STU3/extension-observation-geneticssequence.html).
Documentation for this format

Full Structure

Name	Flags	Card.	Type	Description & Constraints
extension		0..*	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet PhaseSet: Phase set information. Use on Element ID Observation
Slices for extension		0..*	Extension	Additional content defined by implementations Slice: Unordered, Open by value:url
extension:Id		0..1	Extension	Phase set ID
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..0
url		1..1	uri	"Id"
value[x]		1..1	uri	Value of extension
extension:MolecularSequence		1..*	Extension	Phase set sequence
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..0
url		1..1	uri	"MolecularSequence"
value[x]		1..1	Reference(MolecularSequence)	Value of extension
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet"
value[x]		0..0
valueBase64Binary			base64Binary
valueBoolean			boolean
valueCanonical			canonical(Any)
valueCode			code
valueDate			date
valueDateTime			dateTime
valueDecimal			decimal
valueId			id
valueInstant			instant
valueInteger			integer
valueMarkdown			markdown
valueOid			oid
valuePositiveInt			positiveInt
valueString			string
valueTime			time
valueUnsignedInt			unsignedInt
valueUri			uri
valueUrl			url
valueUuid			uuid
valueAddress			Address
valueAge			Age
valueAnnotation			Annotation
valueAttachment			Attachment
valueCodeableConcept			CodeableConcept
valueCodeableReference			CodeableReference
valueCoding			Coding
valueContactPoint			ContactPoint
valueCount			Count
valueDistance			Distance
valueDuration			Duration
valueHumanName			HumanName
valueIdentifier			Identifier
valueMoney			Money
valuePeriod			Period
valueQuantity			Quantity
valueRange			Range
valueRatio			Ratio
valueRatioRange			RatioRange
valueReference			Reference(Any)
valueSampledData			SampledData
valueSignature			Signature
valueTiming			Timing
valueContactDetail			ContactDetail
valueContributor			Contributor
valueDataRequirement			DataRequirement
valueExpression			Expression
valueParameterDefinition			ParameterDefinition
valueRelatedArtifact			RelatedArtifact
valueTriggerDefinition			TriggerDefinition
valueUsageContext			UsageContext
valueDosage			Dosage
valueMeta			Meta
Documentation for this format

XML Template

<!-- PhaseSet -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet" >
 <-- extension sliced by value:url  in the specified orderOpen-->
 <extension url="Id">  0..1 Extension  <!--  0..1 Phase set ID -->
  <valueUri value="[uri]"/><!--  1..1 Value of extension -->
 </extension>
 <extension url="MolecularSequence">  1..* Extension  <!--  1..* Phase set sequence -->
  <valueReference><!--  1..1 Reference(MolecularSequence) Value of extension --></valueReference>
 </extension>
</extension>

JSON Template

{ // PhaseSet
    "extension" : [ //  sliced by value:url  in the specified order, Open 
      { // Phase set ID // C?
        // from Element: extension
        "extension" : [ //  sliced by value:url  in the specified order, Open ]
        "url" : "Id", // R! 
        "valueUri" : "<uri>" // C? R! Value of extension
      },
      { // Phase set sequence // C? R! 
        // from Element: extension
        "extension" : [ //  sliced by value:url  in the specified order, Open ]
        "url" : "MolecularSequence", // R! 
        "valueReference" : { Reference(MolecularSequence) } // C? R! Value of extension
      }
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsPhaseSet", // R! 
// value[x]: Value of extension. One of these 52:
  }

Constraints

• ele-1: All FHIR elements must have a @value or children unless an empty Parameters resource (xpath: @value|f:*|h:div|self::f:Parameters)
• ext-1: Must have either extensions or value[x], not both (xpath: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')]))
• ele-1: On Extension.extension: All FHIR elements must have a @value or children (xpath on Extension.extension: @value|f:*|h:div)
• ext-1: On Extension.extension: Must have either extensions or value[x], not both (xpath on Extension.extension: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")]))
• ele-1: On Extension.extension: All FHIR elements must have a @value or children (xpath on Extension.extension: @value|f:*|h:div)
• ext-1: On Extension.extension: Must have either extensions or value[x], not both (xpath on Extension.extension: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")]))
• ele-1: On Extension.extension.extension: All FHIR elements must have a @value or children (xpath on Extension.extension.extension: @value|f:*|h:div)
• ext-1: On Extension.extension.extension: Must have either extensions or value[x], not both (xpath on Extension.extension.extension: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")]))
• ele-1: On Extension.extension.value[x]: All FHIR elements must have a @value or children (xpath on Extension.extension.value[x]: @value|f:*|h:div)
• ele-1: On Extension.extension: All FHIR elements must have a @value or children (xpath on Extension.extension: @value|f:*|h:div)
• ext-1: On Extension.extension: Must have either extensions or value[x], not both (xpath on Extension.extension: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")]))
• ele-1: On Extension.extension.extension: All FHIR elements must have a @value or children (xpath on Extension.extension.extension: @value|f:*|h:div)
• ext-1: On Extension.extension.extension: Must have either extensions or value[x], not both (xpath on Extension.extension.extension: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")]))
• ele-1: On Extension.extension.value[x]: All FHIR elements must have a @value or children (xpath on Extension.extension.value[x]: @value|f:*|h:div)
• ele-1: On Extension.value[x]: All FHIR elements must have a @value or children (xpath on Extension.value[x]: @value|f:*|h:div)