Example Provenance/example-cwl (Turtle)
Raw Turtle (+ also see Turtle/RDF Format Specification)
MolecularSequence for CWL workflow project
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:Provenance;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "example-cwl"];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n <p>\n <b>Generated Narrative with Details</b>\n </p><p>\n <b>id</b>: cwl-example</p><p>\n <b>target</b>: <a href=\"http://hl7.org/fhir/2022Sep/sequence-example-pgx-1.html\">MolecularSequence/example-pgx-1</a>\n </p><p>\n <b>period</b>: Nov 30, 2016 --> (ongoing)</p><p>\n <b>recorded</b>: Dec 1, 2016 8:12:14 AM</p><p>\n <b>reason</b>: profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:\n [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs) from\n high throughput sequencing data.')</p>\n <h3>Agents</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Who</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',\n stated as 'null')</td>\n <td>\n <a href=\"http://hl7.org/fhir/2022Sep/patient-example.html\">Patient/example</a>\n </td>\n </tr>\n </table>\n <h3>Entities</h3>\n <table>\n <tr>\n <td>-</td>\n <td>\n <b>Role</b>\n </td>\n <td>\n <b>Reference</b>\n </td>\n </tr>\n <tr>\n <td>*</td>\n <td>source</td>\n <td>\n <a href=\"https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl\">CWL example</a>\n </td>\n </tr>\n </table>\n </div>"
];
fhir:Provenance.target [
fhir:index 0;
fhir:Reference.reference [ fhir:value "MolecularSequence/example-pgx-1/_history/1" ]
];
fhir:Provenance.occurredPeriod [
fhir:Period.start [ fhir:value "2016-11-30"^^xsd:date ]
];
fhir:Provenance.recorded [ fhir:value "2016-12-01T08:12:14+10:00"^^xsd:dateTime];
fhir:Provenance.activity [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-DataOperation" ];
fhir:Coding.code [ fhir:value "CREATE" ];
fhir:Coding.display [ fhir:value "create" ]
];
fhir:CodeableConcept.text [ fhir:value "profiling Short Tandem Repeats (STRs) from high throughput sequencing data." ]
];
fhir:Provenance.agent [
fhir:index 0;
fhir:Provenance.agent.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ParticipationType" ];
fhir:Coding.code [ fhir:value "AUT" ]
]
];
fhir:Provenance.agent.who [
fhir:Reference.reference [ fhir:value "Patient/example" ]
]
];
fhir:Provenance.entity [
fhir:index 0;
fhir:Provenance.entity.role [ fhir:value "source" ];
fhir:Provenance.entity.what [
fhir:Reference.identifier [
fhir:Identifier.type [
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "https://github.com/common-workflow-language/workflows" ];
fhir:Coding.code [ fhir:value "CWL" ];
fhir:Coding.display [ fhir:value "lobSTR" ]
]
];
fhir:Identifier.value [ fhir:value "https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.cwl" ]
]
]
]] .
# - ontology header ------------------------------------------------------------
[a owl:Ontology;
owl:imports fhir:fhir.ttl] .
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.