Release 5 Ballot

This page is part of the FHIR Specification (v5.0.0-ballot: R5 Ballot - see ballot notes). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Example GenomicStudy/genomicFile2 (Turtle)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw Turtle (+ also see Turtle/RDF Format Specification)

DocumentReference - Genomic File 2

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

[a fhir:DocumentReference;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "genomicFile2"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource &quot;genomicFile2&quot; </p></div><p><b>identifier</b>: id: 11112</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoMother.html\">Patient/denovoMother: Jane Doe</a> &quot; DOE&quot;</p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p></blockquote></div>"
  ];
  fhir:DocumentReference.identifier [
     fhir:index 0;
     fhir:Identifier.system [ fhir:value "http://www.somesystemabc.net/identifiers/files" ];
     fhir:Identifier.value [ fhir:value "11112" ]
  ];
  fhir:DocumentReference.status [ fhir:value "current"];
  fhir:DocumentReference.docStatus [ fhir:value "preliminary"];
  fhir:DocumentReference.subject [
     fhir:Reference.reference [ fhir:value "Patient/denovoMother" ];
     fhir:Reference.display [ fhir:value "Jane Doe" ]
  ];
  fhir:DocumentReference.description [ fhir:value "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."];
  fhir:DocumentReference.securityLabel [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-Confidentiality" ];
       fhir:Coding.code [ fhir:value "R" ];
       fhir:Coding.display [ fhir:value "Restricted" ]
     ]
  ];
  fhir:DocumentReference.content [
     fhir:index 0;
     fhir:DocumentReference.content.attachment [
       fhir:Attachment.url [ fhir:value "http://www.somesystemabc.net/identifiers/files/11112" ];
       fhir:Attachment.title [ fhir:value "Sample Genomic File" ];
       fhir:Attachment.creation [ fhir:value "2021-01-01T01:01:01+01:00"^^xsd:dateTime ]
     ]
  ]] .

# - ontology header ------------------------------------------------------------

[a owl:Ontology;
  owl:imports fhir:fhir.ttl] .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.