Observation-example-TPMT-haplotype-one.json

Example of a TPMT haplotype observation

{
  "resourceType": "Observation",
  "id": "example-TPMT-haplotype-one",
  "text": {
    "status": "extensions",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>Gene</b>: <span>TPMT</span></p><p><b>status</b>: unknown</p><p><b>code</b>: <span>Haplotype Call</span></p><p><b>subject</b>: <a>E***********. Generated Summary: Medical record number: 12345 (USUAL); active; Peter James Chalmers (OFFICIAL), Jim , Peter James Windsor (MAIDEN); , Phone: (03) 5555 6473, Phone: (03) 3410 5613, Phone: (03) 5555 8834; gender: male; birthDate: 1974-12-25; </a></p><p><b>issued</b>: 4 Apr. 2013, 1:30:10 am</p><p><b>value</b>: <span>*1</span></p><p><b>derivedFrom</b>: <a>Generated Summary: type: dna; 1; observedSeq: T-C-C-C-A-C-C-C</a></p></div>"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://www.genenames.org",
            "code": "12014",
            "display": "TPMT"
          }
        ]
      }
    }
  ],
  "status": "unknown",
  "code": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "363779003",
        "display": "Genotype determination"
      }
    ],
    "text": "Haplotype Call"
  },
  "subject": {
    "reference": "Patient/example",
    "display": "E***********"
  },
  "issued": "2013-04-03T15:30:10+01:00",
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://pharmakb.org",
        "code": "PA166128347",
        "display": "*1"
      }
    ]
  },
  "derivedFrom": [
    {
      "reference": "MolecularSequence/example-TPMT-one"
    }
  ]
}