Release 5 Preview #3

This page is part of the FHIR Specification (v4.5.0: R5 Preview #3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4 R3

4.4.1.659 Value Set http://hl7.org/fhir/ValueSet/variant-state

Clinical Genomics Work Group Maturity Level: 0Informative Use Context: Any

This is a value set defined by the FHIR project.

Summary

Defining URL:http://hl7.org/fhir/ValueSet/variant-state
Version:4.5.0
Name:sequenceStatus
Title:sequenceStatus
Definition:

Codes providing the status of the variant test result.

Committee:Clinical Genomics Work Group
OID:2.16.840.1.113883.4.642.3.217 (for OID based terminology systems)
Source ResourceXML / JSON

This value set is used in the following places:

  • CodeSystem: This value set is the designated 'entire code system' value set for sequenceStatus

4.4.1.659.1 Content Logical Definition

 

4.4.1.659.2 Expansion

This expansion generated 20 Aug 2020

This value set contains 3 concepts

Expansion based on sequenceStatus v4.5.0 (CodeSystem)

All codes from system http://terminology.hl7.org/CodeSystem/variant-state

CodeDisplayDefinition
positivepositivethe variant is detected.
negativenegativeno variant is detected.
absentabsentresult of the variant is missing.

 

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

LvlA few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
SourceThe source of the definition of the code (when the value set draws in codes defined elsewhere)
CodeThe code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
DisplayThe display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
DefinitionAn explanation of the meaning of the concept
CommentsAdditional notes about how to use the code