This page is part of the FHIR Specification (v4.5.0: R5 Preview #3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3
Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Patient |
Raw XML (canonical form + also see XML Format Specification)
MolecularSequence Graphic example-3 (id = "graphic-example-3")
<?xml version="1.0" encoding="UTF-8"?> <MolecularSequence xmlns="http://hl7.org/fhir"> <id value="graphic-example-3"/> <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <p> <b> id</b> : graphic-example-3</p> <p> <b> type</b> : dna</p> <p> <b> coordinateSystem</b> : 0</p> <h3> ReferenceSeqs</h3> <table> <tr> <td> -</td> <td> <b> ReferenceSeqPointer</b> </td> <td> <b> Strand</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> </tr> <tr> <td> *</td> <td> <a> Generated Summary: id: graphic-example-5; type: dna; 0</a> </td> <td> watson</td> <td> 128273732</td> <td> 128273736</td> </tr> </table> <h3> Variants</h3> <table> <tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ObservedAllele</b> </td> <td> <b> ReferenceAllele</b> </td> <td> <b> Cigar</b> </td> </tr> <tr> <td> *</td> <td> 1282737234</td> <td> 128273736</td> <td> GA</td> <td> AT</td> <td> 2M</td> </tr> </table> <p> <b> pointer</b> : <a> Generated Summary: id: graphic-example-4; type: dna; 0</a> </p> </div> </text> <type value="dna"/> <coordinateSystem value="0"/> <referenceSeq> <referenceSeqPointer> <reference value="MolecularSequence/graphic-example-5"/> </referenceSeqPointer> <strand value="watson"/> <windowStart value="128273732"/> <windowEnd value="128273736"/> </referenceSeq> <variant> <start value="1282737234"/> <end value="128273736"/> <observedAllele value="GA"/> <referenceAllele value="AT"/> <cigar value="2M"/> </variant> <pointer> <reference value="MolecularSequence/graphic-example-4"/> </pointer> </MolecularSequence>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.