Observation-example-herd1.ttl

An example of a herd screening ELISA assay for Mycoplasmal Pneumonia in Pigs.

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Observation/herd1> a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "herd1"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p><b>id</b>: herd1</p><p/><p><b>category</b>: <span>Laboratory</span></p><p><b>code</b>: <span>Mycoplasma hyopneumoniae - MHP</span></p><p><b>subject</b>: <a>Generated Summary: id: herd1; id: 20171120-1234; active; type: animal; actual; <span>Porcine</span>; name: Breeding herd; 2500</a></p><p><b>encounter</b>: <span>part of a health assurance program</span></p><p><b>effective</b>: 2017-11-20</p><p><b>value</b>: 0.2 % (sample/positive control)</p><p><b>interpretation</b>: <span>Negative</span></p><p><b>specimen</b>: <a>30 serum. Generated Summary: id: pooled-serum; id: 20171120-1234; <span>Pooled serum sample</span>; Pooled serum sample from 30 individuals</a></p><h3>ReferenceRanges</h3><table><tr><td>-</td><td><b>Text</b></td></tr><tr><td>*</td><td>&gt;0.4 Positive; 0.3 to 0.4 Suspect &lt; 0.3 Negative</td></tr></table></div>"
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
       fhir:Coding.code [ fhir:value "laboratory" ];
       fhir:Coding.display [ fhir:value "Laboratory" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Laboratory" ]
  ];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:80219-9;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "80219-9" ];
       fhir:Coding.display [ fhir:value "Mycoplasma hyopneumoniae Ab sample/Positive control in Serum by Immunoassay" ]
     ], [
       fhir:index 1;
       fhir:Coding.system [ fhir:value "http://acme.org/devices/clinical-codes" ];
       fhir:Coding.code [ fhir:value "Mycoplasma" ];
       fhir:Coding.display [ fhir:value "Mycoplasma" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Mycoplasma hyopneumoniae - MHP" ]
  ];
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Group/herd1>;
     fhir:Reference.reference [ fhir:value "Group/herd1" ]
  ];
  fhir:Observation.encounter [
     fhir:Reference.display [ fhir:value "part of a health assurance program" ]
  ];
  fhir:Observation.effectiveDateTime [ fhir:value "2017-11-20"^^xsd:date];
  fhir:Observation.valueQuantity [
     fhir:Quantity.value [ fhir:value "0.2"^^xsd:decimal ];
     fhir:Quantity.unit [ fhir:value "% (sample/positive control)" ];
     fhir:Quantity.system [ fhir:value "http://unitsofmeasure.org" ];
     fhir:Quantity.code [ fhir:value "%" ]
  ];
  fhir:Observation.interpretation [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" ];
       fhir:Coding.code [ fhir:value "NEG" ];
       fhir:Coding.display [ fhir:value "Negative" ]
     ];
     fhir:CodeableConcept.text [ fhir:value "Negative" ]
  ];
  fhir:Observation.specimen [
     fhir:link <http://hl7.org/fhir/Specimen/pooled-serum>;
     fhir:Reference.reference [ fhir:value "Specimen/pooled-serum" ];
     fhir:Reference.display [ fhir:value "30 serum" ]
  ];
  fhir:Observation.referenceRange [
     fhir:index 0;
     fhir:Observation.referenceRange.text [ fhir:value ">0.4 Positive; 0.3 to 0.4 Suspect < 0.3 Negative" ]
  ] .

<http://hl7.org/fhir/Group/herd1> a fhir:Group .

<http://hl7.org/fhir/Specimen/pooled-serum> a fhir:Specimen .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Observation/herd1.ttl> a owl:Ontology;
  owl:imports fhir:fhir.ttl;
  owl:versionIRI <http://build.fhir.org/Observation/herd1.ttl> .

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