Release 5 Preview #3

This page is part of the FHIR Specification (v4.5.0: R5 Preview #3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R5 R4B R4 R3

Coord-1base-example

Clinical Genomics Work Group

Maturity Level: N/A

Standards Status: Informative

Compartments: Patient

This is the narrative for the resource. See also the XML, JSON or Turtle format. This example conforms to the profile MolecularSequence.

Generated Narrative

id: coord-1-base

type: dna

coordinateSystem: 1

ReferenceSeqs

-

ReferenceSeqString

Strand

WindowStart

WindowEnd

*

ACGTAGTC

watson

1

8

variant
start: 2
end: 3
observedAllele: ATG
referenceAllele: -
cigar: 3I

variant
start: 5
end: 5
observedAllele: T
referenceAllele: A
cigar: 3I

variant
start: 7
end: 7
observedAllele: -
referenceAllele: T
cigar: 1D

observedSeq: ACATGGTAGC

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.