This page is part of the FHIR Specification (v3.5.0: R4 Ballot #2). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3
Clinical Genomics Work Group | Maturity Level: N/A | Ballot Status: Informative | Compartments: Not linked to any defined compartments |
Raw XML (canonical form + also see XML Format Specification)
Sequence Graphic example-1 (id = "graphic-example-1")
<?xml version="1.0" encoding="UTF-8"?> <Sequence xmlns="http://hl7.org/fhir"> <id value="graphic-example-1"/> <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : graphic-example-1</p> <p> <b> type</b> : dna</p> <p> <b> coordinateSystem</b> : 0</p> <h3> ReferenceSeqs</h3> <table> <tr> <td> -</td> <td> <b> ReferenceSeqId</b> </td> <td> <b> Strand</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> </tr> <tr> <td> *</td> <td> NC_000002.12 <span> (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000002.12' = 'NC_000002.12)</span> </td> <td> watson</td> <td> 128273724</td> <td> 128273732</td> </tr> </table> <h3> Variants</h3> <table> <tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ObservedAllele</b> </td> <td> <b> ReferenceAllele</b> </td> <td> <b> Cigar</b> </td> </tr> <tr> <td> *</td> <td> 128273725</td> <td> 128273726</td> <td> G</td> <td> T</td> <td> 1M</td> </tr> </table> <p> <b> pointer</b> : <a> Sequence/graphic-example-2</a> </p> </div> </text> <type value="dna"/> <coordinateSystem value="0"/> <referenceSeq> <referenceSeqId> <coding> <system value="http://www.ncbi.nlm.nih.gov/nuccore"/> <code value="NC_000002.12"/> </coding> </referenceSeqId> <strand value="watson"/> <windowStart value="128273724"/> <windowEnd value="128273732"/> </referenceSeq> <variant> <start value="128273725"/> <end value="128273726"/> <observedAllele value="G"/> <referenceAllele value="T"/> <cigar value="1M"/> </variant> <pointer> <reference value="Sequence/graphic-example-2"/> </pointer> </Sequence>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.