Provenance-example-cwl.xml

Provenance example for cwl workflow project (id = "example-cwl")

<Provenance xmlns="http://hl7.org/fhir">
  <id value="example-cwl"/> 
  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : cwl-example</p> <p> <b> target</b> : <a href="http://build.fhir.org/sequence-example-pgx-1.html">Sequence/example-pgx-1</a> </p> <p> <b> period</b> : Nov 30, 2016 --&gt; (ongoing)</p> <p> <b> recorded</b> : Dec 1, 2016 8:12:14 AM</p> <p> <b> reason</b> : profiling Short Tandem Repeats (STRs) from high throughput sequencing data. (Details:
         [not stated] code null = 'null', stated as 'profiling Short Tandem Repeats (STRs)
         from
         high throughput sequencing data.')</p> <h3> Agents</h3> <table> <tr> <td> -</td> <td> <b> Role</b> </td> <td> <b> Who[x]</b> </td> </tr> <tr> <td> *</td> <td> Author (Details: http://hl7.org/fhir/provenance-participant-role code author = 'Author',
             stated as 'null')</td> <td> <a href="http://build.fhir.org/patient-example.html">Patient/example</a> </td> </tr> </table> <h3> Entities</h3> <table> <tr> <td> -</td> <td> <b> Role</b> </td> <td> <b> Reference</b> </td> </tr> <tr> <td> *</td> <td> source</td> <td> <a href="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
            wl">CWL example</a> </td> </tr> </table> </div>    </text> 
  <target> 
    <reference value="Sequence/example-pgx-1"/> 
  </target> 
  <occurredPeriod> 
    <start value="2016-11-30"/> 
  </occurredPeriod> 
  <recorded value="2016-12-01T08:12:14+10:00"/> 

  <reason> 
      <text value="profiling Short Tandem Repeats (STRs) from high throughput sequencing data."/> 
  </reason> 
 <agent>  
    <type> 
      <coding> 
        <system value="http://hl7.org/fhir/v3/ParticipationType"/> 
        <code value="AUT"/> 
      </coding> 
    </type> 
    <whoReference> 
      <reference value="Patient/example"/> 
    </whoReference> 
  </agent> 

<entity> 
  <role value="source"/> 
  <whatIdentifier> 
  <!--  
    <reference value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lo
      bSTR/lobSTR-workflow.cwl"/>
  removed this as it throws warnings in build. Could not figure out what to replace it
       with.
    -->
      <type> 
        <coding> 
       <system value="https://github.com/common-workflow-language/workflows"/> 
           <code value="CWL"/> 
           <display value="lobSTR"/> 
        </coding> 
      </type> 
      <value value="https://github.com/common-workflow-language/workflows/blob/master/workflows/lobSTR/lobSTR-workflow.c
      wl"/> 
  </whatIdentifier> 
</entity> 
</Provenance>