Sequence-example.xml

Simple sequence example (id = "example")

<Sequence xmlns="http://hl7.org/fhir">
    <id value="example"/>
    <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>type</b>: DNA</p><p><b>coordinateSystem</b>: 0</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000009.11 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000009.11' = 'NC_000009.11)</span></td><td>1</td><td>22125500</td><td>22125510</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>22125503</td><td>22125504</td><td>C</td><td>G</td></tr></table><h3>Repositories</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Url</b></td><td><b>Name</b></td><td><b>VariantsetId</b></td></tr><tr><td>*</td><td>openapi</td><td><a>http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/json</a></td><td>GA4GH API</td><td>3:rs1333049</td></tr></table></div></text><type value="DNA"/>
    <coordinateSystem value="0"/>
    <patient>
        <reference value="Patient/example"/>
    </patient>
    <referenceSeq>
        <referenceSeqId>
          <coding>
            <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>
            <code value="NC_000009.11"/>
          </coding>
        </referenceSeqId>
        <strand value="1"/>
        <windowStart value="22125500"/>
        <windowEnd value="22125510"/>
    </referenceSeq>
    <variant>
        <start value="22125503"/>
        <end value="22125504"/>
        <observedAllele value="C"/>
        <referenceAllele value="G"/>
    </variant>
    <repository>
        <type value="openapi"/>
        <url value="http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-type=application/json"/>
        <name value="GA4GH API"/>
        <variantsetId value="3:rs1333049"/>
    </repository>
</Sequence>