Sequence-example-TPMT-one.xml

Example of a TPMT SNP data that support a haplotype observation (id = "example-TPMT-one")

<Sequence xmlns="http://hl7.org/fhir">
    <id value="example-TPMT-one"/>
    <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-TPMT-one</p><p><b>type</b>: DNA</p><p><b>coordinateSystem</b>: 1</p><p><b>patient</b>: <a>Patient/example</a></p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NT_007592.15 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NT_007592.15' = 'NT_007592.15)</span></td><td>1</td><td>18130918</td><td>18143955</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td></tr><tr><td>*</td><td>18139214</td><td>18139214</td><td>A</td><td>G</td></tr></table><p><b>observedSeq</b>: T-C-C-C-A-C-C-C</p></div></text><type value="DNA"/>
    <coordinateSystem value="1"/>
    <patient>
        <reference value="Patient/example"/>
    </patient>
    <referenceSeq>
        <referenceSeqId>
          <coding>
            <system value="http://www.ncbi.nlm.nih.gov/nuccore"/>
            <code value="NT_007592.15"/>
          </coding>
        </referenceSeqId>
        <strand value="1"/>
        <windowStart value="18130918"/>
        <windowEnd value="18143955"/>
    </referenceSeq>
    <variant>
        <start value="18139214"/>
        <end value="18139214"/>
        <observedAllele value="A"/>
        <referenceAllele value="G"/>
    </variant>
    <observedSeq value="T-C-C-C-A-C-C-C"/>
</Sequence>