Observation-example-phenotype.xml

Example of phenotype data (id = "example-phenotype")

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-phenotype"/>
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-phenotype</p><p><b>status</b>: final</p><p><b>code</b>: CYP2C9 gene product metabolic activity interpretation <span>(Details : {LOINC code '79716-7' = 'CYP2C9 gene product metabolic activity interpretation
           in Blood or Tissue Qualitative by CPIC', given as 'CYP2C9 gene product metabolic activity
           interpretation'})</span></p><p><b>subject</b>: <a>J*********** C***********</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>value</b>: Normal metabolizer <span>(Details : {LOINC code 'LA25391-6' = 'Normal metabolizer', given as 'Normal metabolizer'})</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p><h3>Relateds</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Target</b></td></tr><tr><td>*</td><td>derived-from</td><td><a>Observation/example-diplotype1</a></td></tr></table></div></text><extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="2623"/>
        <display value="CYP2C9"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <status value="final"/>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="79716-7"/>
      <display value="CYP2C9 gene product metabolic activity interpretation"/>
    </coding>
  </code>
  <subject>
    <reference value="Patient/727127"/>
    <display value="J*********** C***********"/>
  </subject>
  <issued value="2013-04-03T15:30:10+01:00"/>
  <valueCodeableConcept>
    <coding>
      <system value="http://loinc.org"/>
      <code value="LA25391-6"/>
      <display value="Normal metabolizer"/>
    </coding>
  </valueCodeableConcept>
  <specimen>
    <reference value="Specimen/genetics-example1-somatic"/>
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/>
  </specimen>
  <related>
    <type value="derived-from"/>
    <target>
      <reference value="Observation/example-diplotype1"/>
    </target>
  </related>
</Observation>