Observation-example-haplotype1.xml

Example of haplotype data that is basis of a diplotype data (id = "example-haplotype1")

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-haplotype1"/>
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-haplotype1</p><p><b>status</b>: unknown</p><p><b>code</b>: Genetic analysis master panel-- This is the parent OBR for the panel holding all of
         the associated observations that can be reported with a molecular genetics analysis result.
         <span>(Details : {LOINC code '55233-1' = 'Genetic analysis master panel - Blood or Tissue by
           Molecular genetics method', given as 'Genetic analysis master panel-- This is the parent
           OBR for the panel holding all of the associated observations that can be reported with
           a molecular genetics analysis result.'})</span></p><p><b>subject</b>: <a>J*********** C***********</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>value</b>: *35B <span>(Details : {http://pharmakb.org code 'PA165971587' = 'PA165971587', given as '*35B'})</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p><blockquote><p><b>related</b></p><p><b>type</b>: derived-from</p><p><b>target</b>: <a>Sequence/example-pgx-1</a></p></blockquote><blockquote><p><b>related</b></p><p><b>type</b>: derived-from</p><p><b>target</b>: <a>Sequence/example-pgx-2</a></p></blockquote></div></text><extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="2625"/>
        <display value="CYP2D6"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
    <valueReference>
      <reference value="Sequence/example-sequence1"/>
    </valueReference>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
    <valueReference>
      <reference value="Sequence/example-sequence2"/>
    </valueReference>
  </extension>
  <status value="unknown"/>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="55233-1"/>
      <display value="Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/>
    </coding>
  </code>  
  <subject>
    <reference value="Patient/727127"/>
    <display value="J*********** C***********"/>
  </subject>
  <issued value="2013-04-03T15:30:10+01:00"/>
  <valueCodeableConcept>
    <coding>
      <system value="http://pharmakb.org"/>
      <code value="PA165971587"/>
      <display value="*35B"/>
    </coding>
  </valueCodeableConcept>
  <specimen>
    <reference value="Specimen/genetics-example1-somatic"/>
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/>
  </specimen>
  <!--   >If you do not like "related", you can delete this block<   -->
  <related>
    <type value="derived-from"/>
    <target>
      <reference value="Sequence/example-pgx-1"/>
    </target>
  </related>
  <related>
    <type value="derived-from"/>
    <target>
      <reference value="Sequence/example-pgx-2"/>
    </target>
  </related>
</Observation>