Observation-example-genetics-1.xml

Genetics example 1 (id = "example-genetics-1")

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-genetics-1"/>
  <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-genetics-1</p><p><b>status</b>: final</p><p><b>code</b>: Genetic analysis master panel-- This is the parent OBR for the panel holding all of
         the associated observations that can be reported with a molecular genetics analysis result.
         <span>(Details : {LOINC code '55233-1' = 'Genetic analysis master panel - Blood or Tissue by
           Molecular genetics method', given as 'Genetic analysis master panel-- This is the parent
           OBR for the panel holding all of the associated observations that can be reported with
           a molecular genetics analysis result.'})</span></p><p><b>subject</b>: <a>Molecular Lab Patient ID: HOSP-23456</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>performer</b>: <a>Molecular Diagnostics Laboratory</a></p><p><b>value</b>: Positive <span>(Details : {SNOMED CT code '10828004' = 'Positive (qualifier value)', given as 'Positive'})</span></p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p></div></text><extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNASequenceVariantName">
    <valueCodeableConcept> 
      <text value="NG_007726.3:g.146252T&gt;G"/>
    </valueCodeableConcept>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="3236"/>
        <display value="EGFR"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNARegionName">
    <valueString value="Exon 21"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA6684-0"/>
        <display value="somatic"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <status value="final"/>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="55233-1"/>
      <display value="Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/>
    </coding>
  </code>
  <subject>
    <reference value="Patient/example"/>
    <display value="Molecular Lab Patient ID: HOSP-23456"/>
  </subject>
  <issued value="2013-04-03T15:30:10+01:00"/>
  <performer>
    <reference value="Practitioner/example"/>
    <display value="Molecular Diagnostics Laboratory"/>
  </performer>
  <valueCodeableConcept>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="10828004"/>
      <display value="Positive"/>
    </coding>
  </valueCodeableConcept>
  <specimen>
    <reference value="Specimen/genetics-example1-somatic"/>
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/>
  </specimen>
</Observation>