Observation-example-diplotype1.xml

Example of diplotype data (with haplotypes observation as reference) (id = "example-diplotype1")

<Observation xmlns="http://hl7.org/fhir">
       <id value="example-diplotype1"/>
       <text><status value="generated"/><div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-diplotype1</p><p><b>status</b>: final</p><p><b>code</b>: Diplotype Call <span>(Details : {SNOMED CT code '363779003' = '363779003', given as 'Genotype determination'})</span></p><p><b>subject</b>: <a>J*********** C***********</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>specimen</b>: <a>Molecular Specimen ID: MLD45-Z4-1234</a></p><blockquote><p><b>related</b></p><p><b>type</b>: derived-from</p><p><b>target</b>: <a>Observation/example-haplotype1</a></p></blockquote><blockquote><p><b>related</b></p><p><b>type</b>: derived-from</p><p><b>target</b>: <a>Observation/example-haplotype2</a></p></blockquote></div></text><extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="2623"/>
        <display value="CYP2C9"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <status value="final"/>
  <code>
    <coding>
      <system value="http://snomed.info"/>
      <code value="363779003"/>
      <display value="Genotype determination"/>
    </coding>
    <text value="Diplotype Call"/>
  </code>
  <subject>
    <reference value="Patient/727127"/>
    <display value="J*********** C***********"/>
  </subject>
  <issued value="2013-04-03T15:30:10+01:00"/>
  <specimen>
    <reference value="Specimen/genetics-example1-somatic"/>
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/>
  </specimen>
  <related>
    <type value="derived-from"/>
    <target>
      <reference value="Observation/example-haplotype1"/>
    </target>
  </related>
  <related>
    <type value="derived-from"/>
    <target>
      <reference value="Observation/example-haplotype2"/>
    </target>
  </related>
</Observation>